Authors: Haro‐Moreno, Jose M., Rodriguez‐Valera, Francisco, Rosselli, Riccardo, Martinez‐Hernandez, Francisco, Roda‐Garcia, Juan J., Lluesma Gómez, Mónica, Fornas, Oscar, Martinez‐Garcia, Manuel, López‐Pérez, Mario
Contributors: Universidad de Alicante. Departamento de Fisiología, Genética y Microbiología, Ecología Microbiana Molecular
Subject Terms: SAR11 clade, Ecogenomics, Microbiología
Relation: https://doi.org/10.1111/1462-2920.14896; Environmental Microbiology. 2020, 22(5): 1748-1763. doi:10.1111/1462-2920.14896; 1462-2912 (Print); 1462-2920 (Online); http://hdl.handle.net/10045/106715
Authors: Stefan Thiele, Andreas Basse, Jamie W. Becker, Andre Lipski, Morten H. Iversen, Gesine Mollenhauer
Superior Title: MicrobiologyOpen, Vol 8, Iss 5, Pp n/a-n/a (2019)
Subject Terms: bacterial community, CARD‐FISH, fatty acid methyl ester, hypoxic layers, nepheloid layer, SAR11 clade, Microbiology, QR1-502
File Description: electronic resource
Relation: https://doaj.org/toc/2045-8827
Authors: Fadeev, Eduard, Cardozo-Mino, Magda Guadalupe, Rapp, Josephine Z, Bienhold, Christina, Salter, Ian, Salman-Carvalho, Verena, Molari, Massimiliano, Tegetmeyer, Halina E, Buttigieg, Pier Luigi, Boetius, Antje
Subject Terms: 2-(4-Amidinophenyl)-1H-indole-6-carboxamidine, Alteromonas, cells, ARK-XXX/1.2, Bacteroidetes, CARD-FISH, cell counts, CTD/Rosette with Underwater Vision Profiler, CTD-RO_UVP, DEPTH, ice/snow, water, EG_I, EG_IV, Event label, Fram Strait, Gammaproteobacteria, Giant box corer, GKG, ICE, Ice station, North Greenland Sea, Polaribacter, Polarstern, PS99/043-3, PS99/048-15, PS99/051-2, PS99/053-8, PS99.2, SAR11 clade
File Description: text/tab-separated-values, 48 data points
Relation: Fadeev, Eduard; Cardozo-Mino, Magda Guadalupe; Rapp, Josephine Z; Bienhold, Christina; Salter, Ian; Salman-Carvalho, Verena; Molari, Massimiliano; Tegetmeyer, Halina E; Buttigieg, Pier Luigi; Boetius, Antje (2021): Comparison of Two 16S rRNA Primers (V3–V4 and V4–V5) for Studies of Arctic Microbial Communities. Frontiers in Microbiology, 12, https://doi.org/10.3389/fmicb.2021.637526; https://doi.pangaea.de/10.1594/PANGAEA.928720; https://doi.org/10.1594/PANGAEA.928720
Authors: Thiele, Stefan, Basse, Andreas, Becker, Jamie W, Lipski, André, Iversen, Morten Hvitfeldt, Mollenhauer, Gesine
Subject Terms: Alteromonas/Colwellia, targeted with Alt1413 oligonucleotide FISH-probe, Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe, Bacteroidetes, targeted with CF319a oligonucleotide FISH-probe, Crenarchaeota marine group I, targeted with Cren554 oligonucleotide FISH-probe, CTD/Rosette, CTD-RO, DEPTH, water, Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probe, GeoB15703-4, Maria S. Merian, MSM18/1, Pseudoalteromonas, targeted with PSA184 oligonucleotide FISH-probe, Roseobacter clade, targeted with ROS537 oligonucleotides FISH-probe, SAR11 clade, targeted with SAR11-441 oligonucleotide FISH-probe, Synechococcus, targeted with SYN405 oligonucleotide FISH-probe
Subject Geographic: LATITUDE: 20.751667 * LONGITUDE: -18.736667 * DATE/TIME START: 2011-04-29T13:38:00 * DATE/TIME END: 2011-04-29T13:38:00 * MINIMUM DEPTH, water: 53 m * MAXIMUM DEPTH, water: 2600 m
Time: 603
File Description: text/tab-separated-values, 180 data points
Relation: https://doi.org/10.1594/PANGAEA.889467; Thiele, Stefan; Basse, Andreas; Becker, Jamie W; Lipski, André; Iversen, Morten Hvitfeldt; Mollenhauer, Gesine (2019): Microbial communities in the nepheloid layers and hypoxic zones of the Canary Current upwelling system. Microbiology Open, 8(5), e00705, https://doi.org/10.1002/mbo3.705; https://doi.pangaea.de/10.1594/PANGAEA.889461; https://doi.org/10.1594/PANGAEA.889461
Authors: Thiele, Stefan, Basse, Andreas, Becker, Jamie W, Lipski, André, Iversen, Morten Hvitfeldt, Mollenhauer, Gesine
Subject Terms: Alteromonas/Colwellia, targeted with Alt1413 oligonucleotide FISH-probe, Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe, Bacteroidetes, targeted with CF319a oligonucleotide FISH-probe, Crenarchaeota marine group I, targeted with Cren554 oligonucleotide FISH-probe, CTD/Rosette, CTD-RO, DEPTH, water, Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probe, GeoB15709-3, Maria S. Merian, MSM18/1, Pseudoalteromonas, targeted with PSA184 oligonucleotide FISH-probe, Roseobacter clade, targeted with ROS537 oligonucleotides FISH-probe, SAR11 clade, targeted with SAR11-441 oligonucleotide FISH-probe, Synechococcus, targeted with SYN405 oligonucleotide FISH-probe
Subject Geographic: LATITUDE: 21.252500 * LONGITUDE: -20.817000 * DATE/TIME START: 2011-05-03T23:47:00 * DATE/TIME END: 2011-05-03T23:47:00 * MINIMUM DEPTH, water: 60 m * MAXIMUM DEPTH, water: 4100 m
Time: 610
File Description: text/tab-separated-values, 180 data points
Relation: https://doi.org/10.1594/PANGAEA.889467; Thiele, Stefan; Basse, Andreas; Becker, Jamie W; Lipski, André; Iversen, Morten Hvitfeldt; Mollenhauer, Gesine (2019): Microbial communities in the nepheloid layers and hypoxic zones of the Canary Current upwelling system. Microbiology Open, 8(5), e00705, https://doi.org/10.1002/mbo3.705; https://doi.pangaea.de/10.1594/PANGAEA.889463; https://doi.org/10.1594/PANGAEA.889463
Authors: Thiele, Stefan, Basse, Andreas, Becker, Jamie W, Lipski, André, Iversen, Morten Hvitfeldt, Mollenhauer, Gesine
Subject Terms: Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe, Bacteroidetes, targeted with CF319a oligonucleotide FISH-probe, Crenarchaeota marine group I, targeted with Cren554 oligonucleotide FISH-probe, CTD/Rosette, CTD-RO, DEPTH, water, Euryarchaeota marine group II, targeted with Eury806 oligonucleotide FISH-probe, Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probe, GeoB14209-2, POS396, Poseidon, Roseobacter clade, targeted with ROS537 oligonucleotides FISH-probe, SAR11 clade, targeted with SAR11-441 oligonucleotide FISH-probe
Subject Geographic: LATITUDE: 20.499660 * LONGITUDE: -17.732500 * DATE/TIME START: 2010-03-05T07:29:00 * DATE/TIME END: 2010-03-05T07:29:00 * MINIMUM DEPTH, water: 15 m * MAXIMUM DEPTH, water: 250 m
Time: 22-10
File Description: text/tab-separated-values, 96 data points
Relation: https://doi.org/10.1594/PANGAEA.889467; Thiele, Stefan; Basse, Andreas; Becker, Jamie W; Lipski, André; Iversen, Morten Hvitfeldt; Mollenhauer, Gesine (2019): Microbial communities in the nepheloid layers and hypoxic zones of the Canary Current upwelling system. Microbiology Open, 8(5), e00705, https://doi.org/10.1002/mbo3.705; https://doi.pangaea.de/10.1594/PANGAEA.889460; https://doi.org/10.1594/PANGAEA.889460
Authors: Thiele, Stefan, Basse, Andreas, Becker, Jamie W, Lipski, André, Iversen, Morten Hvitfeldt, Mollenhauer, Gesine
Subject Terms: Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe, Bacteroidetes, targeted with CF319a oligonucleotide FISH-probe, Crenarchaeota marine group I, targeted with Cren554 oligonucleotide FISH-probe, CTD/Rosette, CTD-RO, DEPTH, water, Euryarchaeota marine group II, targeted with Eury806 oligonucleotide FISH-probe, Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probe, GeoB14207-1, POS396, Poseidon, Roseobacter clade, targeted with ROS537 oligonucleotides FISH-probe, SAR11 clade, targeted with SAR11-441 oligonucleotide FISH-probe
Subject Geographic: LATITUDE: 20.583160 * LONGITUDE: -17.999830 * DATE/TIME START: 2010-03-03T12:41:00 * DATE/TIME END: 2010-03-03T12:41:00 * MINIMUM DEPTH, water: 20 m * MAXIMUM DEPTH, water: 700 m
Time: 22-10
File Description: text/tab-separated-values, 116 data points
Relation: https://doi.org/10.1594/PANGAEA.889467; Thiele, Stefan; Basse, Andreas; Becker, Jamie W; Lipski, André; Iversen, Morten Hvitfeldt; Mollenhauer, Gesine (2019): Microbial communities in the nepheloid layers and hypoxic zones of the Canary Current upwelling system. Microbiology Open, 8(5), e00705, https://doi.org/10.1002/mbo3.705; https://doi.pangaea.de/10.1594/PANGAEA.889459; https://doi.org/10.1594/PANGAEA.889459
Authors: Thiele, Stefan, Basse, Andreas, Becker, Jamie W, Lipski, André, Iversen, Morten Hvitfeldt, Mollenhauer, Gesine
Subject Terms: Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe, Bacteroidetes, targeted with CF319a oligonucleotide FISH-probe, Crenarchaeota marine group I, targeted with Cren554 oligonucleotide FISH-probe, CTD/Rosette, CTD-RO, DEPTH, water, Euryarchaeota marine group II, targeted with Eury806 oligonucleotide FISH-probe, Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probe, GeoB14204-3, POS396, Poseidon, Roseobacter clade, targeted with ROS537 oligonucleotides FISH-probe, SAR11 clade, targeted with SAR11-441 oligonucleotide FISH-probe
Subject Geographic: LATITUDE: 19.166830 * LONGITUDE: -20.999830 * DATE/TIME START: 2010-03-01T16:21:00 * DATE/TIME END: 2010-03-01T16:21:00 * MINIMUM DEPTH, water: 65.00 m * MAXIMUM DEPTH, water: 1000.00 m
Time: 22-10
File Description: text/tab-separated-values, 93 data points
Relation: https://doi.org/10.1594/PANGAEA.889467; Thiele, Stefan; Basse, Andreas; Becker, Jamie W; Lipski, André; Iversen, Morten Hvitfeldt; Mollenhauer, Gesine (2019): Microbial communities in the nepheloid layers and hypoxic zones of the Canary Current upwelling system. Microbiology Open, 8(5), e00705, https://doi.org/10.1002/mbo3.705; https://doi.pangaea.de/10.1594/PANGAEA.889458; https://doi.org/10.1594/PANGAEA.889458
Authors: Thiele, Stefan, Basse, Andreas, Becker, Jamie W, Lipski, André, Iversen, Morten Hvitfeldt, Mollenhauer, Gesine
Subject Terms: Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe, Bacteroidetes, targeted with CF319a oligonucleotide FISH-probe, Crenarchaeota marine group I, targeted with Cren554 oligonucleotide FISH-probe, CTD/Rosette, CTD-RO, DEPTH, water, Euryarchaeota marine group II, targeted with Eury806 oligonucleotide FISH-probe, Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probe, GeoB14202-6, POS396, Poseidon, Roseobacter clade, targeted with ROS537 oligonucleotides FISH-probe, SAR11 clade, targeted with SAR11-441 oligonucleotide FISH-probe
Subject Geographic: LATITUDE: 20.743330 * LONGITUDE: -18.717330 * DATE/TIME START: 2010-02-27T18:02:00 * DATE/TIME END: 2010-02-27T18:02:00 * MINIMUM DEPTH, water: 20 m * MAXIMUM DEPTH, water: 2650 m
Time: 22-10
File Description: text/tab-separated-values, 129 data points
Relation: https://doi.org/10.1594/PANGAEA.889467; Thiele, Stefan; Basse, Andreas; Becker, Jamie W; Lipski, André; Iversen, Morten Hvitfeldt; Mollenhauer, Gesine (2019): Microbial communities in the nepheloid layers and hypoxic zones of the Canary Current upwelling system. Microbiology Open, 8(5), e00705, https://doi.org/10.1002/mbo3.705; https://doi.pangaea.de/10.1594/PANGAEA.889457; https://doi.org/10.1594/PANGAEA.889457
Authors: Fuchs, Bernhard M, Bennke, Christin M, Reintjes, Greta, Kassabgy, Mariette, Amann, Rudolf I
Subject Terms: DATE/TIME, DEPTH, water, Julian day, Bacterioplankton, Non-bacteria control, targeted with NON338 oligonucleotides FISH-probe, Bacteria, targed with EUB338I-III oligonucleotide FISH-probe, Alphaproteobacteria, targeted with ALF968 oligonucleotides FISH-probe, SAR11 clade, targeted with SAR11-486 oligonucleotides FISH-probe, SAR11 clade, targeted with SAR11-441 oligonucleotide FISH-probe, Roseobacter clade, targeted with ROS537 oligonucleotides FISH-probe, NAC11-7 clade, targeted with NAC11-7-1030 oligonucleotides FISH-probe, Roseobacter clade, targeted with RCA1000 oligonucleotides FISH-probe, Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probe, Reinekea, targeted with REI731 oligonucleotides FISH-probe, Balneatrix, targeted with Bal731 oligonucleotides FISH-probe, OM182 clade, targeted with OM182-707 oligonucleotides FISH-probe, NOR5 clade, targeted with NOR5-730 oligonucleotides FISH-probe, Pseudoalteromonas, targeted with PSA184 oligonucleotide FISH-probe, Alteromonas/Colwellia, targeted with Alt1413 oligonucleotide FISH-probe, Vibrio, targeted with GV841 oligonucleotide FISH-probe, SAR92 clade, targeted with SAR92-627 oligonucleotides FISH-probe, SAR86 clade, targeted with SAR86-1245 oligonucleotide FISH-probe, Glaciecola, targeted with Glac227 oligonucleotides FISH-probe, Cytophaga-Flavobacterium cluster, targeted with CF319a oligonucleotide FISH-probe, Polaribacter, targeted with POL740 oligonucleotides FISH-probe, Formosa, targeted with FORM181A oligonucleotides FISH-probe, Formosa, targeted with FORM181B oligonucleotides FISH-probe, Ulvibacter, targeted with ULV995 oligonucleotides FISH-probe, VIS6 clade, targeted with VIS6-814 oligonucleotides FISH-probe, NS3a clade, targeted with NS3a-840 oligonucleotides FISH-probe
File Description: text/tab-separated-values
Relation: https://store.pangaea.de/Publications/Teeling-etal_2012/Oligonucleotide-probes_Teeling-etal_2012.pdf; https://store.pangaea.de/Publications/Teeling-etal_2016/Oligonucleotide-probes_Teeling-etal_2016.pdf; https://dx.doi.org/10.1126/science.1218344; https://dx.doi.org/10.7554/elife.11888; https://dx.doi.org/10.1594/pangaea.737388; https://dx.doi.org/10.1594/pangaea.736644; https://dx.doi.org/10.1594/pangaea.756613; https://dx.doi.org/10.1594/pangaea.783570; https://dx.doi.org/10.1594/pangaea.783571; https://dx.doi.org/10.1594/pangaea.820157; https://dx.doi.org/10.1594/pangaea.810745; https://dx.doi.org/10.1594/pangaea.820206
Subject Terms: Accession number, genetics, AEGEAN-169 marine group, targeted with the AEGEAN-169 mix oligonucleotide FISH-probes, Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH), CTD/Rosette, CTD-RO, DEPTH, water, Event label, Flow cytometry, Microbial abundance, cells, Number, Prochlorococcus, targeted with PRO405 oligonucleotide FISH-probe, SAR11 mix oligonucleotide FISH-probes targeting SAR11 clade, SAR202 clade, targeted with SAR202-312R oligonucleotide FISH-probe, SAR324 clade, targeted with SAR324-1412 oligonucleotide FISH-probe, SAR406 clade, targeted with SAR406-97 oligonucleotide FISH-probe, SAR86 clade, targeted with SAR86-1245 oligonucleotide FISH-probe, SO245, SO245_10-1, SO245_1-1, SO245_11-1, SO245_12-2
Subject Geographic: MEDIAN LATITUDE: -30.101353 * MEDIAN LONGITUDE: -121.254259 * SOUTH-BOUND LATITUDE: -39.310400 * WEST-BOUND LONGITUDE: -170.000180 * NORTH-BOUND LATITUDE: -23.491900 * EAST-BOUND LONGITUDE: -84.562420 * DATE/TIME START: 2015-12-25T18:03:00 * DATE/TIME END: 2016-01-24T04:30:00 * MINIMUM DEPTH, water: 5 m * MAXIMUM DEPTH, water: 5125 m
File Description: text/tab-separated-values, 2922 data points
Relation: Reintjes, Greta; Tegetmeyer, Halina E; Bürgisser, Miriam; Orlic, Sandi; Tews, Ivo; Zubkov, Mikhail V; Voß, Daniela; Zielinski, Oliver; Quast, Christian; Glöckner, Frank Oliver; Amann, Rudolf; Ferdelman, Timothy G; Fuchs, Bernhard M (2019): On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre. Applied and Environmental Microbiology, 85(14), https://doi.org/10.1128/AEM.00184-19; Reintjes, Greta; Amann, Rudolf I; Arnosti, Carol; Fuchs, Bernhard M (2020): Microbial community composition and polysaccharide processing potential in the South Pacific Gyre. European Nucleotide Archive (ENA), insdc:PRJEB40503; Oligonucleotide probes and formamide concentration used in Reintjes etal., 2017 (URI: https://store.pangaea.de/Publications/Reintjes-etal_2017/Oligonucleotide-probes_Reintjes-etal_2017.pdf); https://doi.pangaea.de/10.1594/PANGAEA.882015; https://doi.org/10.1594/PANGAEA.882015
Authors: Mary, Isabelle, Heywood, J.-L., Fuchs, B.M., Amann, R., Tarran, G. A., Burkill, P. H., Zukbov M., V.
Contributors: Laboratoire Microorganismes : Génome et Environnement (LMGE), Université Blaise Pascal - Clermont-Ferrand 2 (UBP)-Centre National de la Recherche Scientifique (CNRS)-Université d'Auvergne - Clermont-Ferrand I (UdA), National Oceanography Centre (NOC), Max Planck Institute for Marine Microbiology, Max-Planck-Gesellschaft, Plymouth Marine Laboratory
Superior Title: ISSN: 0948-3055 ; Aquatic Microbial Ecology ; https://hal.archives-ouvertes.fr/hal-00528806 ; Aquatic Microbial Ecology, Inter Research, 2006, 45 (2), pp.107-113.
Subject Terms: low cytometry sorting, cell metabolic activity, SAR11 clade, CARD-FISH, radioactive tracer labelling, Atlantic Ocean, [SDV.EE]Life Sciences [q-bio]/Ecology, environment
Relation: hal-00528806; https://hal.archives-ouvertes.fr/hal-00528806
Availability: https://hal.archives-ouvertes.fr/hal-00528806
Authors: Jimenez Infante, Francy M.
Contributors: Stingl, Ulrich, Biological and Environmental Science and Engineering (BESE) Division, Berumen, Michael L., Saikaly, Pascal E., Mason, Olivia
Subject Terms: Dilution-to-Extinction, SAR11 clade, OM43 clade, PS1 clade, Comparative Genomics, Red Sea
Relation: Jimenez Infante, F. M. (2015). How do Bacteria Adapt to the Red Sea? Cultivation and Genomic and Physiological Characterization of Oligotrophic Bacteria of the PS1, OM43, and SAR11 Clades. KAUST Research Repository. https://doi.org/10.25781/KAUST-YT06P; http://hdl.handle.net/10754/552701