Electronic Resource
Ecogenomics of the SAR11 clade
| Title: | Ecogenomics of the SAR11 clade |
|---|---|
| Publisher Information: | John Wiley & Sons 2020-05 |
| Added Details: | Universidad de Alicante. Departamento de Fisiología, Genética y Microbiología Haro‐Moreno, Jose M. Rodriguez‐Valera, Francisco Rosselli, Riccardo Martinez‐Hernandez, Francisco Roda‐Garcia, Juan J. Lluesma Gómez, Mónica Fornas, Oscar Martinez‐Garcia, Manuel López‐Pérez, Mario |
| Document Type: | Electronic Resource |
| Abstract: | Members of the SAR11 clade, despite their high abundance, are often poorly represented by metagenome‐assembled genomes. This fact has hampered our knowledge about their ecology and genetic diversity. Here we examined 175 SAR11 genomes, including 47 new single‐amplified genomes. The presence of the first genomes associated with subclade IV suggests that, in the same way as subclade V, they might be outside the proposed Pelagibacterales order. An expanded phylogenomic classification together with patterns of metagenomic recruitment at a global scale have allowed us to define new ecogenomic units of classification (genomospecies), appearing at different, and sometimes restricted, metagenomic data sets. We detected greater microdiversity across the water column at a single location than in samples collected from similar depth across the global ocean, suggesting little influence of biogeography. In addition, pangenome analysis revealed that the flexible genome was essential to shape genomospecies distribution. In one genomospecies preferentially found within the Mediterranean, a set of genes involved in phosphonate utilization was detected. While another, with a more cosmopolitan distribution, was unique in having an aerobic purine degradation pathway. Together, these results provide a glimpse of the enormous genomic diversity within this clade at a finer resolution than the currently defined clades. |
| Index Terms: | SAR11 clade, Ecogenomics, info:eu-repo/semantics/article |
| URL: | |
| Availability: | Open access content. Open access content info:eu-repo/semantics/openAccess © 2019 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
| Other Numbers: | ESALI oai:rua.ua.es:10045/106715 Environmental Microbiology. 2020, 22(5): 1748-1763. doi:10.1111/1462-2920.14896 1462-2912 (Print) 1462-2920 (Online) 10.1111/1462-2920.14896 1155241317 |
| Contributing Source: | UNIV DE ALICANTE From OAIster®, provided by the OCLC Cooperative. |
| Accession Number: | edsoai.on1155241317 |
| Database: | OAIster |
| Description not available. |