Authors: Hongbo Zhao, Johanna Karppi, Owen Mototsune, Daria Poshina, Jenny Svartström, Thi Truc Minh Nguyen, Tri Minh Vo, Adrian Tsang, Emma Master, Maija Tenkanen

Superior Title: Biotechnology for Biofuels and Bioproducts, Vol 17, Iss 1, Pp 1-22 (2024)

Subject Terms: CAZy family AA3_2, Gentiobiose, Oxidoreductase, Phenoxy radical, Sequence similarity network, Biotechnology, TP248.13-248.65, Fuel, TP315-360

File Description: electronic resource

Relation: https://doaj.org/toc/2731-3654

Access URL: https://doaj.org/article/642799862ad24db89d9e656c9afb1c3d

Authors: Zhao, Hongbo, Karppi, Johanna, Mototsune, Owen, Poshina, Daria, Svartström, Jenny Johanna, Nguyen , Thi Truc Minh, Vo, Tri Minh, Tsang, Adrian, Master, Emma R., Tenkanen, Maija

Contributors: Department of Food and Nutrition, Carbohydrate Chemistry and Enzymology, Helsinki Institute of Sustainability Science (HELSUS)

Subject Terms: 4112 Forestry, CAZy AA3, Gentiobiose, Oxidoreductase, Phenoxy radicals, sequence similarity network

File Description: application/pdf

Relation: Zhao , H , Karppi , J , Mototsune , O , Poshina , D , Svartström , J J , Nguyen , T T M , Vo , T M , Tsang , A , Master , E R & Tenkanen , M 2024 , ' Substrate specificity mapping of fungal CAZy AA3_2 oxidoreductases ' , Biotechnology for biofuels and bioproducts , vol. 17 . https://doi.org/10.1186/s13068-024-02491-8; ORCID: /0000-0003-2883-2717/work/157596453; ORCID: /0000-0002-8959-214X/work/157598489; http://hdl.handle.net/10138/574279; 03297086-46bd-4e7b-97b7-45653814742a; 85188944583

Availability: http://hdl.handle.net/10138/574279

Authors: Liangzhi Li, Zhenghua Liu, Delong Meng, Yongjun Liu, Tianbo Liu, Chengying Jiang, Huaqun Yin

Superior Title: mSystems, Vol 8, Iss 5 (2023)

Subject Terms: ferrous iron oxidation, horizontal gene transfer, sequence similarity network, protein structure prediction, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/80f3ba322a4f46e28497ce3abb868ec5

Authors: Böhm, Cornelia^{Aff1, Aff2}, Gourinchas, Geoffrey^{Aff1, Aff3}, Zweytick, Sophie, Hujdur, Elvira, Reiter, Martina, Trstenjak, Sara, Sensen, Christoph Wilhelm^{Aff2, Aff4}, Winkler, Andreas^{Aff1, Aff2, IDs43630022002557_cor8}

Superior Title: Photochemical & Photobiological Sciences. 21(10):1761-1779

Authors: Kaur, Arashdeep^{Aff1, Aff2}, Scott, Nichollas E., Herisse, Marion, Goddard-Borger, Ethan D.^{Aff4, Aff5}, Pidot, Sacha, Williams, Spencer J.^{Aff1, Aff2, IDs0020302303506y_cor6}

Superior Title: Archives of Microbiology. 205(4)

Authors: Elizabeth Rzoska-Smith, Ronja Stelzer, Maria Monterio, Stephen C. Cary, Adele Williamson

Superior Title: Frontiers in Microbiology, Vol 14 (2023)

Subject Terms: Antarctic Dry Valleys, metagenome, sequence similarity network, DNA repair, nuclease, DNA ligase, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2023.1156817/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/f27852ff6f28482fa72c5438683ad250

Authors: Mohamad Maatouk, Vicky Merhej, Pierre Pontarotti, Ahmad Ibrahim, Jean-Marc Rolain, Fadi Bittar

Superior Title: Microorganisms, Vol 11, Iss 1933, p 1933 (2023)

Subject Terms: Candidate Phyla Radiation, bacteria, metallo-beta-lactamase fold, massive analysis, functional diversity, sequence similarity network, Biology (General), QH301-705.5

Relation: https://www.mdpi.com/2076-2607/11/8/1933; https://doaj.org/toc/2076-2607; https://doaj.org/article/324dece75bc046f69395fcad6a43d0b5

Availability: https://doi.org/10.3390/microorganisms11081933
https://doaj.org/article/324dece75bc046f69395fcad6a43d0b5

Authors: Maatouk, Mohamad, Merhej, Vicky, Pontarotti, Pierre, Ibrahim, Ahmad, Rolain, Jean-Marc, Bittar, Fadi

Contributors: Microbes évolution phylogénie et infections (MEPHI), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Institut Hospitalier Universitaire Méditerranée Infection (IHU Marseille), Centre National de la Recherche Scientifique (CNRS)

Superior Title: ISSN: 2076-2607 ; Microorganisms ; https://hal.science/hal-04275003 ; Microorganisms, 2023, 11 (8), pp.1933. ⟨10.3390/microorganisms11081933⟩.

Subject Terms: Candidate Phyla Radiation, bacteria, metallo-beta-lactamase fold, massive analysis, functional diversity, sequence similarity network, protein domains, enzyme promiscuity, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], [SDV.MHEP.ME]Life Sciences [q-bio]/Human health and pathology/Emerging diseases, [SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases

Relation: hal-04275003; https://hal.science/hal-04275003; https://hal.science/hal-04275003/document; https://hal.science/hal-04275003/file/microorganisms-11-01933-v3.pdf

Availability: https://doi.org/10.3390/microorganisms11081933
https://hal.science/hal-04275003
https://hal.science/hal-04275003/document
https://hal.science/hal-04275003/file/microorganisms-11-01933-v3.pdf

Authors: Wei, Bin^{Aff1, Aff2, Aff3}, Wang, Ya-Kun, Yu, Jin-Biao, Wang, Si-Jia^{Aff1, Aff4}, Yu, Yan-Lei, Xu, Xue-Wei^Aff3, Wang, Hong^{Aff1, Aff2}

Superior Title: Journal of Microbiology. 59(10):931-940

Authors: Jaroch, Marshall, Sun, Guangxin, Tsui, Ho-Ching Tiffany, Reed, Colbie, Sun, Jingjing, Jörg, Marko, Winkler, Malcolm E, Rice, Kelly C, Dziergowska, Agnieszka, Stich, Troy A, Dedon, Peter C, Dos Santos, Patricia C, de Crécy-Lagard, Valérie

Superior Title: J Bacteriol ; ISSN:1098-5530 ; Volume:206 ; Issue:4

Subject Terms: MnmL, MnmM, YtqA, YtqB, comparative genomics, mnm5s2U, rSAM, sequence similarity network, tRNA modification

Relation: https://doi.org/10.1128/jb.00452-23; https://pubmed.ncbi.nlm.nih.gov/38551342; https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11025329/

Availability: https://doi.org/10.1128/jb.00452-23
https://pubmed.ncbi.nlm.nih.gov/38551342
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11025329/

Authors: Hailey E. Beal, Nicole A. Horenstein

Superior Title: AMB Express, Vol 11, Iss 1, Pp 1-11 (2021)

Subject Terms: 1-Deoxynojirimycin, Azasugars, Biosynthesis, Sequence similarity networks, Biotechnology, TP248.13-248.65, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2191-0855

Access URL: https://doaj.org/article/96af2cf71d2d4bd080d0e651c05a68a6

Authors: Ehdieh Khaledian, Sinem Ulusan, Jeffery Erickson, Stephen Fawcett, Michael C. Letko, Shira L. Broschat

Superior Title: EBioMedicine, Vol 79, Iss , Pp 103990- (2022)

Subject Terms: Coronavirus, Zoonosis, Sequence similarity network, Entry assay, Pseudotype, Mathematical model, Medicine, Medicine (General), R5-920

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352396422001748; https://doaj.org/toc/2352-3964

Access URL: https://doaj.org/article/3c60f7fbd5d94492b71c043b0d938c26

Authors: Shruti S. Patil, Helen N. Catanese, Kelly A. Brayton, Eric T. Lofgren, Assefaw H. Gebremedhin

Superior Title: Viruses; Volume 14; Issue 8; Pages: 1672

Subject Terms: sequence similarity network, SARS-CoV-2, spike protein, mutations

Subject Geographic: agris

File Description: application/pdf

Relation: SARS-CoV-2 and COVID-19; https://dx.doi.org/10.3390/v14081672

Availability: https://doi.org/10.3390/v14081672

Authors: Ao Li, Mounir Benkoulouche, Simon Ladeveze, Julien Durand, Gianluca Cioci, Elisabeth Laville, Gabrielle Potocki-Veronese

Superior Title: International Journal of Molecular Sciences; Volume 23; Issue 6; Pages: 3043

Subject Terms: glycoside phosphorylases, carbohydrate-active enzymes, glycosides, glycochemistry, biotechnology, functional metagenomics, sequence similarity networks, screening

Subject Geographic: agris

File Description: application/pdf

Relation: Biochemistry; https://dx.doi.org/10.3390/ijms23063043

Availability: https://doi.org/10.3390/ijms23063043

Authors: Moracci, Marco, Li, Ao, Benkoulouche, Mounir, Ladeveze, Simon, Durand, Julien, Cioci, Gianluca, Laville, Elisabeth, Potocki-Veronese, Gabrielle

Contributors: Toulouse Biotechnology Institute (TBI), Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), FNR-2020-SEP-210639118 Commission européenne, China Scholarship Council under the 'CSC-UT/INSA Program', ANR-16-CE20-0006,OLIGOMET,Châssis métabolique polyvalent pour la production d'oligosaccharides à haute valeur-ajoutée(2016), European Project: 685474,H2020,H2020-LEIT-BIO-2015-1,METAFLUIDICS(2016)

Superior Title: ISSN: 1661-6596.

Subject Terms: G glycoside phosphorylases, carbohydrate-active enzymes, glycosides, glycochemistry, biotechnology, functional metagenomics, sequence similarity networks, screening, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology

Relation: info:eu-repo/semantics/altIdentifier/pmid/35328479; info:eu-repo/grantAgreement//685474/EU/Advanced toolbox for rapid and cost-effective functional metagenomic screening - microbiology meets microfluidics./METAFLUIDICS; hal-03640987; https://hal.inrae.fr/hal-03640987; https://hal.inrae.fr/hal-03640987/document; https://hal.inrae.fr/hal-03640987/file/2022_Li_International-Journal-of-Molecular-Sciences.pdf; PUBMED: 35328479; WOS: 000775255000001

Availability: https://doi.org/10.3390/ijms23063043
https://hal.inrae.fr/hal-03640987
https://hal.inrae.fr/hal-03640987/document
https://hal.inrae.fr/hal-03640987/file/2022_Li_International-Journal-of-Molecular-Sciences.pdf

Authors: Beal, Hailey E., Horenstein, Nicole A.^Aff1

Superior Title: AMB Express. 11(1)

Authors: Robert Esch, Rainer Merkl

Superior Title: BMC Bioinformatics, Vol 21, Iss 1, Pp 1-8 (2020)

Subject Terms: Protein-protein interaction, Complex formation, Sequence similarity network, Genome neighborhood network, Binary classifier, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/0dac8a3415104413a96a6e19e43d8513

Authors: Leong, Richalynn^Aff2, Urano, Daisuke^Aff2

Contributors: Kozai, Toyoki, editor^Aff1

Superior Title: Smart Plant Factory : The Next Generation Indoor Vertical Farms. :301-323

Authors: Alexander S. Riegert (10183295), Tamari Narindoshvili (1327911), Frank M. Raushel (1306041)

Subject Terms: Biophysics, Biochemistry, Microbiology, Pharmacology, Cancer, Infectious Diseases, Space Science, Chemical Sciences not elsewhere classified, sugar molecules known, sequence similarity networks, p nmr spectroscopy, esi mass spectrometry, new amide bond, coupled enzyme assay, jejuni nctc 11168, first functional characterization, either ethanolamine phosphate, >)- serinol phosphate, amide bond formation, 31 , campylobacter jejuni <, functional characterization, either ethanolamine, campylobacter jejuni, amide bonds, candidate enzyme, n <, jejuni leads, work represents, verified using

Relation: https://figshare.com/articles/journal_contribution/Discovery_and_Functional_Characterization_of_a_Clandestine_ATP-Dependent_Amidoligase_in_the_Biosynthesis_of_the_Capsular_Polysaccharide_from_i_Campylobacter_jejuni_i_/17516184

Availability: https://doi.org/10.1021/acs.biochem.1c00707.s001

Authors: Hailey E. Beal (11322575), Nicole A. Horenstein (11322578)

Subject Terms: Microbiology, Genetics, 1-Deoxynojirimycin, Azasugars, Biosynthesis, Sequence similarity networks

Relation: https://figshare.com/articles/journal_contribution/Additional_file_1_of_Comparative_genomic_analysis_of_azasugar_biosynthesis/16417646

Availability: https://doi.org/10.6084/m9.figshare.16417646.v1