Search Results - chloroplast

1

Academic Journal

Comparative chloroplast genomes of Dactylicapnos species: insights into phylogenetic relationships.

Authors: Yang, Shunquan^1,2 (AUTHOR), Chen, Juntong¹ (AUTHOR), Li, Zhimin² (AUTHOR), Huang, Xianhan¹ (AUTHOR), Zhang, Xu³ (AUTHOR), Liu, Qun¹ (AUTHOR), Tojibaev, Komiljon⁴ (AUTHOR), Sun, Hang¹ (AUTHOR) sunhang@mail.kib.ac.cn, Deng, Tao¹ (AUTHOR) dengtao@mail.kib.ac.cn

Superior Title: BMC Plant Biology. 4/29/2024, Vol. 24 Issue 1, p1-12. 12p.

Subject Terms: *CHLOROPLAST DNA, *CHLOROPLASTS, *GENOMICS, *SPECIES, *GENETIC code

Geographic Terms: HIMALAYA Mountains, CHINA

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2

Academic Journal

The complete chloroplast genome and phylogentic results support the species position of Swertia banzragczii and Swertia marginata (Gentianaceae) in Mongolia.

Authors: Oyuntsetseg, Dashzeveg¹ (AUTHOR), Nyamgerel, Nudkhuu² (AUTHOR), Baasanmunkh, Shukherdorj² (AUTHOR), Oyuntsetseg, Batlai¹ (AUTHOR), Urgamal, Magsar³ (AUTHOR), Yoon, Jung Won⁴ (AUTHOR), Bayarmaa, Gun-Aajav¹ (AUTHOR) g.bayarmaa@num.edu.mn, Choi, Hyeok Jae² (AUTHOR) hjchoi1975@changwon.ac.kr

Superior Title: Botanical Studies. 4/24/2024, Vol. 65 Issue 1, p1-13. 13p.

Subject Terms: *CHLOROPLAST DNA, *SWERTIA, *CHLOROPLASTS, *GENTIANACEAE, *GENETIC variation, *SPECIES, *GENETIC barcoding

Geographic Terms: MONGOLIA

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3

Academic Journal

Sequence characteristics, genetic diversity and phylogenetic analysis of the Cucurbita ficifolia (Cucurbitaceae) chloroplasts genome.

Authors: He, Shuilian^1,2 (AUTHOR), Xu, Bin¹ (AUTHOR), Chen, Siyun³ (AUTHOR), Li, Gengyun¹ (AUTHOR), Zhang, Jie¹ (AUTHOR), Xu, Junqiang¹ (AUTHOR), Wu, Hang¹ (AUTHOR), Li, Xuejiao¹ (AUTHOR) lixuejiao@ynau.edu.cn, Yang, Zhengan^1,2 (AUTHOR) yangzhengan@ynau.edu.cn

Superior Title: BMC Genomics. 4/18/2024, Vol. 25 Issue 1, p1-15. 15p.

Subject Terms: *CHLOROPLAST DNA, *GENETIC variation, *GENOMES, *CHLOROPLASTS, *CROPS, *GERMPLASM, *CUCURBITACEAE, *CUCURBITA

Geographic Terms: YUNNAN Sheng (China), CHINA

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4

Academic Journal

Phylogenetic placement of the monotypic Baolia (Amaranthaceae s.l.) based on morphological and molecular evidence.

Authors: Liu, Shuai¹ (AUTHOR), Veranso-Libalah, Marie Claire² (AUTHOR), Sukhorukov, Alexander P.^3,4 (AUTHOR) suchor@mail.ru, Sun, Xuegang⁵ (AUTHOR), Nilova, Maya V.³ (AUTHOR), Kushunina, Maria^4,6 (AUTHOR), Mamut, Jannathan¹ (AUTHOR), Wen, Zhibin^7,8,9,10 (AUTHOR) zhibinwen@ms.xjb.ac.cn

Superior Title: BMC Plant Biology. 5/25/2024, p1-17. 17p.

Subject Terms: *CHLOROPLAST DNA, *MICROSATELLITE repeats, *AMARANTHACEAE, *CHENOPODIACEAE, *RESEMBLANCE (Philosophy), *COREMAKING

Geographic Terms: GANSU Sheng (China), CHINA

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5

Academic Journal

Comparative chloroplast-specific SNP and nSCoT markers analysis and population structure study in kiwifruit plants.

Authors: Ding, Yinling^1,2,3,4 (AUTHOR), Wang, Yu^1,2,3,4,5 (AUTHOR), Chen, Zhe^1,2,3,4 (AUTHOR), Dou, Jiamin^1,2,3,4 (AUTHOR), Zhang, Yihao^1,2,3,4 (AUTHOR), Zhang, Yu^1,2,3,4 (AUTHOR) yuzhang20160315@outlook.com

Superior Title: Hereditas. 5/17/2024, Vol. 161 Issue 1, p1-10. 10p.

Subject Terms: *CHLOROPLAST DNA, *KIWIFRUIT, *SINGLE nucleotide polymorphisms, *GENETIC variation, *HAPLOTYPES, *DIOECIOUS plants, *PRINCIPAL components analysis

Geographic Terms: CHINA, NEW Zealand

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6

Academic Journal

Solanum aculeatissimum and Solanum torvum chloroplast genome sequences: a comparative analysis with other Solanum chloroplast genomes.

Authors: Zhang, Longhao¹ (AUTHOR), Yi, Chengqi¹ (AUTHOR), Xia, Xin¹ (AUTHOR), Jiang, Zheng¹ (AUTHOR), Du, Lihui¹ (AUTHOR), Yang, Shixin¹ (AUTHOR), Yang, Xu¹ (AUTHOR) yangxu@yzu.edu.cn

Superior Title: BMC Genomics. 4/26/2024, Vol. 25 Issue 1, p1-15. 15p.

Subject Terms: *CHLOROPLAST DNA, *SOLANUM, *SEQUENCE analysis, *MICROSATELLITE repeats, *PLANT classification, *BASE pairs

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7

Academic Journal

Twelve newly assembled jasmine chloroplast genomes: unveiling genomic diversity, phylogenetic relationships and evolutionary patterns among Oleaceae and Jasminum species.

Authors: Xu, Xiuming^1,2 (AUTHOR), Huang, Hechen² (AUTHOR), Lin, Shaoqing¹ (AUTHOR), Zhou, Linwei¹ (AUTHOR), Yi, Yuchong² (AUTHOR), Lin, Enwen¹ (AUTHOR), Feng, Liqing¹ (AUTHOR), Zheng, Yu² (AUTHOR), Lin, Aiting¹ (AUTHOR), Yu, Liying³ (AUTHOR), Shen, Yingjia² (AUTHOR), Henry, Robert J.⁴ (AUTHOR), Fang, Jingping^1,4 (AUTHOR) jinphia@fjnu.edu.cn

Superior Title: BMC Plant Biology. 4/25/2024, Vol. 24 Issue 1, p1-19. 19p.

Subject Terms: *CHLOROPLAST DNA, *JASMINE, *OLEACEAE, *GENOME size, *SPECIES, *GENETIC variation

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8

Academic Journal

The size diversity of the Pteridaceae family chloroplast genome is caused by overlong intergenic spacers.

Authors: Gu, Xiaolin¹ (AUTHOR), Li, Lingling¹ (AUTHOR), Zhong, Xiaona¹ (AUTHOR), Su, Yingjuan^2,3 (AUTHOR) suyj@mail.sysu.edu.cn, Wang, Ting¹ (AUTHOR) tingwang@scau.edu.cn

Superior Title: BMC Genomics. 4/22/2024, Vol. 25 Issue 1, p1-14. 14p.

Subject Terms: *CHLOROPLAST DNA, *ADIANTACEAE, *GENETIC variation, *FAMILIES

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9

Academic Journal

Extraction and analysis of high-quality chloroplast DNA with reduced nuclear DNA for medicinal plants.

Authors: Yu, Yifan^1,2 (AUTHOR), Wang, Xinxin¹ (AUTHOR), Qu, Renjun¹ (AUTHOR), OuYang, Zhen² (AUTHOR), Guo, Juan¹ (AUTHOR), Zhao, Yujun¹ (AUTHOR) zhaoyj@nrc.ac.cn, Huang, Luqi^1,2 (AUTHOR) huangluqi01@126.com

Superior Title: BMC Biotechnology. 4/18/2024, Vol. 24 Issue 1, p1-10. 10p.

Subject Terms: *CHLOROPLAST DNA, *NUCLEAR DNA, *MEDICINAL plants, *PLANT DNA, *CELL anatomy, *PORTULACA oleracea

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10

Academic Journal

Comparative analysis of chloroplast genomes of Pulsatilla species reveals evolutionary and taxonomic status of newly discovered endangered species Pulsatilla saxatilis.

Authors: Xue, Hefei^1,2 (AUTHOR), Xing, Yanping^1,3 (AUTHOR), Bian, Che¹ (AUTHOR), Hou, Wenjuan¹ (AUTHOR), Men, Wenxiao¹ (AUTHOR), Zheng, Han^3,4 (AUTHOR), Yang, Yanyun¹ (AUTHOR) 343502325@qq.com, Ying, Xixiang¹ (AUTHOR), Kang, Tingguo¹ (AUTHOR), Xu, Liang¹ (AUTHOR) 861364054@qq.com

Superior Title: BMC Plant Biology. 4/17/2024, Vol. 24 Issue 1, p1-16. 16p.

Subject Terms: *CHLOROPLAST DNA, *ENDANGERED species, *GENETIC variation, *POLLEN, *SPECIES, *COMPARATIVE studies

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11

Academic Journal

Chloroplast genomes of Caragana tibetica and Caragana turkestanica: structures and comparative analysis.

Authors: Liu, LiE¹ (AUTHOR), Li, HongYan¹ (AUTHOR), Li, JiaXin¹ (AUTHOR), Li, XinJuan¹ (AUTHOR), Hu, Na² (AUTHOR), Sun, Jing² (AUTHOR), Zhou, Wu¹ (AUTHOR) zhouwu870624@qhu.edu.cn

Superior Title: BMC Plant Biology. 4/10/2024, Vol. 24 Issue 1, p1-18. 18p.

Subject Terms: *CHLOROPLAST DNA, *PLANT species, *COMPARATIVE studies

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12

Academic Journal

Complete plastid genome of Iris orchioides and comparative analysis with 19 Iris plastomes.

Authors: Choi, Tae-Young¹ (AUTHOR), Lee, Soo-Rang¹ (AUTHOR) ra1130@hotmail.com

Superior Title: PLoS ONE. 4/5/2024, Vol. 19 Issue 4, p1-21. 21p.

Subject Terms: *CHLOROPLAST DNA, *GENETIC markers, *GENOMES, *INVERTED repeats (Genetics), *GENETIC variation, *COMPARATIVE studies, *GENOME size, *MOLECULAR diagnosis

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13

Academic Journal

Chloroplast genome of Calamus tetradactylus revealed rattan phylogeny.

Authors: Zhang, Haibo¹ (AUTHOR) zhanghaibo4@genomics.cn, Liu, Peng¹ (AUTHOR), Zhang, Yi² (AUTHOR), Sun, Huayu^3,4 (AUTHOR), Wang, Yue¹ (AUTHOR), Gao, Zhimin^3,4 (AUTHOR), Liu, Xin¹ (AUTHOR) liuxin@genomics.cn

Superior Title: BMC Genomic Data. 3/25/2024, Vol. 25 Issue 1, p1-11. 11p.

Subject Terms: *CHLOROPLASTS, *CHLOROPLAST DNA, *PHYLOGENY, *SUSTAINABILITY, *SUSTAINABLE development, *COMPARATIVE genomics

Geographic Terms: LAOS, VIETNAM

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14

Academic Journal

Three complete chloroplast genomes from two north American Rhus species and phylogenomics of Anacardiaceae.

Authors: Huang, Lan¹ (AUTHOR), Xu, Yujie² (AUTHOR), Valcárcel, Virginia^3,4 (AUTHOR), Lutz, Sue⁵ (AUTHOR), Wen, Jun⁵ (AUTHOR) wenj@si.edu, Ren, Zhumei¹ (AUTHOR) zmren@sxu.edu.cn

Superior Title: BMC Genomic Data. 3/15/2024, Vol. 25 Issue 1, p1-14. 14p.

Subject Terms: *CHLOROPLAST DNA, *MICROSATELLITE repeats, *ANACARDIACEAE, *TRANSFER RNA, *SPECIES, *GERMPLASM, *CHLOROPLAST membranes

Geographic Terms: AMERICA, EAST Asia

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15

Academic Journal

Plastid genome data provide new insights into the dynamic evolution of the tribe Ampelopsideae (Vitaceae).

Authors: Zhang, Lei¹ (AUTHOR), Meng, Ying¹ (AUTHOR), Wang, Da¹ (AUTHOR), He, Guan-Hao¹ (AUTHOR), Zhang, Jun-Ming¹ (AUTHOR), Wen, Jun² (AUTHOR), Nie, Ze-Long¹ (AUTHOR) niez@jsu.edu.cn

Superior Title: BMC Genomics. 3/5/2024, Vol. 25 Issue 1, p1-16. 16p.

Subject Terms: *CHLOROPLAST DNA, *TRIBES, *PALINDROMIC DNA, *GENOMES, *CHLOROPLASTS, *MEDICINAL plants

Geographic Terms: ANTARCTICA

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16

Academic Journal

CLAW: An automated Snakemake workflow for the assembly of chloroplast genomes from long-read data.

Authors: Phillips, Aaron L.¹ (AUTHOR) aaron.phillips@adelaide.edu.au, Ferguson, Scott² (AUTHOR), Burton, Rachel A.¹ (AUTHOR), Watson-Haigh, Nathan S.^3,4,5 (AUTHOR)

Superior Title: PLoS Computational Biology. 2/9/2024, Vol. 20 Issue 2, p1-15. 15p.

Subject Terms: *PLANT organelles, *CHLOROPLAST DNA, *ALGAL cells, *CLAWS, *WHOLE genome sequencing, *CHLOROPLASTS, *WORKFLOW

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17

Academic Journal

Comparative analysis and characterization of the chloroplast genome of Krascheninnikovia ceratoides (Amarathaceae): a xerophytic semi-shrub exhibiting drought resistance and high-quality traits.

Authors: Liu, Yuping^1,2,3 (AUTHOR), Zheng, Changyuan¹ (AUTHOR), Su, Xu^1,2,3 (AUTHOR) xusu8527972@126.com, Chen, Jinyuan¹ (AUTHOR), Li, Xiaoli¹ (AUTHOR), Sun, Chenglin¹ (AUTHOR), Nizamani, Mir Muhammad⁴ (AUTHOR) mirmohammadnizamani@outlook.com

Superior Title: BMC Genomic Data. 1/29/2024, Vol. 25 Issue 1, p1-15. 15p.

Subject Terms: *CHLOROPLAST DNA, *MICROSATELLITE repeats, *CHLOROPLASTS, *NUCLEOTIDE sequencing, *COMPARATIVE studies, *DROUGHTS, *GENOMES

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18

Academic Journal

The evolutionary history of three Baracoffea species from western Madagascar revealed by chloroplast and nuclear genomes.

Authors: Bezandry, Rickarlos^1,2 (AUTHOR), Dupeyron, Mathilde³ (AUTHOR), Gonzalez-Garcia, Laura Natalia^3,4 (AUTHOR), Anest, Artemis⁵ (AUTHOR), Hamon, Perla³ (AUTHOR), Ranarijaona, Hery Lisy Tiana² (AUTHOR), Vavitsara, Marie Elodie² (AUTHOR), Sabatier, Sylvie⁵ (AUTHOR), Guyot, Romain³ (AUTHOR) Romain.guyot@ird.fr

Superior Title: PLoS ONE. 1/11/2024, Vol. 19 Issue 1, p1-16. 16p.

Subject Terms: *CHLOROPLAST DNA, *CHLOROPLASTS, *SINGLE nucleotide polymorphisms, *TROPICAL dry forests, *DECIDUOUS forests, *SANDY soils, *SPECIES

Geographic Terms: MADAGASCAR

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19

Academic Journal

A phylogenetic analysis and delimitation of Turanecio (Asteraceae: Senecioneae).

Authors: BOZKURT, Meryem¹ mbozkurt@selcuk.edu.tr, UYSAL, Tuna², HAMZAOĞLU, Ergin

Superior Title: Turkish Journal of Botany. 2024, Vol. 48 Issue 1, p28-43. 16p.

Subject Terms: *NUCLEAR DNA, *CHLOROPLAST DNA, *BAYESIAN analysis, *CHLOROPLASTS, *ASTERACEAE

Geographic Terms: IRAN, CAUCASUS, IRAQ

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20

Academic Journal

Genetic diversities in wild and cultivated populations of the two closely-related medical plants species, Tripterygium Wilfordii and T. Hypoglaucum (Celastraceae).

Authors: Liu, Chao¹ (AUTHOR), Wang, Jingyi¹ (AUTHOR), Ko, Ya-Zhu² (AUTHOR), Shiao, Meng-Shin³ (AUTHOR), Wang, Yiheng¹ (AUTHOR), Sun, Jiahui¹ (AUTHOR), Yuan, Qingjun¹ (AUTHOR) yuanqingjun@icmm.ac.cn, Wang, Lisong⁴ (AUTHOR) wanglisong@lsbg.cn, Chiang, Yu-Chung^2,5,6 (AUTHOR) yuchung@mail.nsysu.edu.tw, Guo, Lanping¹ (AUTHOR) glp01@126.com

Superior Title: BMC Plant Biology. 3/19/2024, Vol. 24 Issue 1, p1-15. 15p.

Subject Terms: *GENETIC variation, *CHLOROPLAST DNA, *PLANT species, *PLANT population genetics, *DNA analysis, *CELASTRACEAE

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