Authors: Salojärvi, JarkkoAff1, Aff2, Aff3, IDs4158802401695w_cor1, Rambani, Aditi, Yu, Zhe, Guyot, RomainAff6, Aff7, Strickler, Susan, Lepelley, Maud, Wang, Cui, Rajaraman, Sitaram, Rastas, Pasi, Zheng, Chunfang, Muñoz, Daniella Santos, Meidanis, João, Paschoal, Alexandre Rossi, Bawin, Yves, Krabbenhoft, Trevor J., Wang, Zhen Qin, Fleck, Steven J., Aussel, RudyAff8, Aff14, Bellanger, Laurence, Charpagne, Aline, Fournier, Coralie, Kassam, Mohamed, Lefebvre, Gregory, Métairon, Sylviane, Moine, Déborah, Rigoreau, Michel, Stolte, Jens, Hamon, Perla, Couturon, Emmanuel, Tranchant-Dubreuil, Christine, Mukherjee, Minakshi, Lan, Tianying, Engelhardt, Jan, Stadler, PeterAff16, Aff17, Correia De Lemos, Samara Mireza, Suzuki, Suzana Ivamoto, Sumirat, Ucu, Wai, Ching Man, Dauchot, Nicolas, Orozco-Arias, Simon, Garavito, Andrea, Kiwuka, Catherine, Musoli, Pascal, Nalukenge, Anne, Guichoux, Erwan, Reinout, Havinga, Smit, Martin, Carretero-Paulet, Lorenzo, Filho, Oliveiro Guerreiro, Braghini, Masako Toma, Padilha, Lilian, Sera, Gustavo Hiroshi, Ruttink, TomAff12, Aff31, Henry, Robert, Marraccini, Pierre, Van de Peer, YvesAff31, Aff34, Aff35, Aff36, Andrade, Alan, Domingues, Douglas, Giuliano, Giovanni, Mueller, Lukas, Pereira, Luiz Filipe, Plaisance, Stephane, Poncet, Valerie, Rombauts, StephaneAff31, Aff36, Sankoff, David, Albert, Victor A.Aff13, IDs4158802401695w_cor66, Crouzillat, DominiqueAff8, IDs4158802401695w_cor67, de Kochko, AlexandreAff6, IDs4158802401695w_cor68, Descombes, PatrickAff15, IDs4158802401695w_cor69
Superior Title: Nature Genetics. 56(4):721-731
Authors: Leal, J Luis, Milesi, Pascal, Hodková, Eva, Zhou, Qiujie, James, Jennifer, Eklund, D Magnus, Pyhäjärvi, Tanja, Salojärvi, Jarkko, Lascoux, Martin
Contributors: Mandel, Jennifer, Swedish Research Council for Sustainable Development, European Union’s Horizon 2020 Research and Innovation Programme
Superior Title: Systematic Biology ; ISSN 1063-5157 1076-836X
Subject Terms: Genetics, Ecology, Evolution, Behavior and Systematics
Availability: https://doi.org/10.1093/sysbio/syae012
Authors: Ræbild, Anders, Anamthawat-Jónsson, Kesara, Egertsdotter, Ulrika, Immanen, Juha, Jensen, Anna Monrad, Koutouleas, Athina, Martens, Helle Jakobe, Nieminen, Kaisa, Olofsson, Jill Katharina, Röper, Anna-Catharina, Salojärvi, Jarkko, Strömvik, Martina, Vatanparast, Mohammad, Vivian-Smith, Adam
Superior Title: In Forest Ecology and Management 15 May 2024 560
Authors: Tomlin, Crystal M., Rajaraman, SitaramAff2, Aff3, Sebesta, Jeanne Theresa, Scheen, Anne-Cathrine, Bendiksby, Mika, Low, Yee Wen, Salojärvi, JarkkoAff2, Aff3, Michael, Todd P., Albert, Victor A.Aff1, IDs4146702447247y_cor9, Lindqvist, CharlotteAff1, IDs4146702447247y_cor10
Superior Title: Nature Communications. 15(1)
Authors: Leal, J. Luis, Milesi, Pascal, Salojärvi, Jarkko, Lascoux, Martin
Contributors: School of Biological Sciences
Subject Terms: Medicine, Health and Life Sciences, Allopolyploidy, Genomic polarization
File Description: application/pdf
Relation: Systematic Biology; Leal, J. L., Milesi, P., Salojärvi, J. & Lascoux, M. (2023). Phylogenetic analysis of allotetraploid species using polarized genomic sequences. Systematic Biology, 72(2), 372-390. https://dx.doi.org/10.1093/sysbio/syad009; https://hdl.handle.net/10356/174304; 2-s2.0-85163831019; 72; 372; 390
Authors: Su, Chang, Kokosza, Andrzej, Xie, Xiaonan, Pěnčík, Aleš, Zhang, Youjun, Raumonen, Pasi, Shi, Xueping, Muranen, Sampo, Topcu, Melis Kucukoglu, Immanen, Juha, Hagqvist, Risto, Safronov, Omid, Alonso-Serra, Juan, Eswaran, Gugan, Venegas, Mirko Pavicic, Ljung, Karin, Ward, Sally, Mähönen, Ari Pekka, Himanen, Kristiina, Salojärvi, Jarkko, Fernie, Alisdair R, Novák, Ondřej, Leyser, Ottoline, Pałubicki, Wojtek, Helariutta, Ykä, Nieminen, Kaisa
Subject Terms: Betula pendula, auxin distribution, branching modeling, strigolactones, tree architecture, Indoleacetic Acids, Plant Growth Regulators, Trees, Lactones, Gene Expression Regulation, Plant
File Description: application/pdf
Availability: https://www.repository.cam.ac.uk/handle/1810/363105
Authors: Leal, J. L., Milesi, Pascal, Hodková, Eva, Zhou, Qiujie, James, Jennifer, Eklund, Magnus, Pyhäjärvi, Tanja, Salojärvi, Jarkko, Lascoux, Martin
Subject Terms: allopolyploidy, autopolyploidy, Betula, Gene flow, genomic polarization, homoeologs, interploidal, introgressive hybridization, polyploid phylogenetics, polyploidization simulation, reticulate evolution
Relation: https://zenodo.org/communities/dryad; https://dx.doi.org/10.5061/dryad.5tb2rbp9f; https://dx.doi.org/10.5281/zenodo.8256509
Authors: Low, Yee WenAff1, Aff2, Aff3, IDs4146702232637x_cor1, Rajaraman, SitaramAff4, Aff5, Tomlin, Crystal M., Ahmad, Joffre Ali, Ardi, Wisnu H., Armstrong, Kate, Athen, Parusuraman, Berhaman, Ahmad, Bone, Ruth E., Cheek, Martin, Cho, Nicholas R. W., Choo, Le Min, Cowie, Ian D., Crayn, Darren, Fleck, Steven J., Ford, Andrew J., Forster, Paul I., Girmansyah, Deden, Goyder, David J., Gray, Bruce, Heatubun, Charlie D.Aff2, Aff16, Aff17, Ibrahim, Ali, Ibrahim, Bazilah, Jayasinghe, Himesh D.Aff18, Aff19, Kalat, Muhammad Ariffin, Kathriarachchi, Hashendra S., Kintamani, Endang, Koh, Sin Lan, Lai, Joseph T. K., Lee, Serena M. L., Leong, Paul K. F., Lim, Wei Hao, Lum, Shawn K. Y., Mahyuni, Ridha, McDonald, William J. F., Metali, Faizah, Mustaqim, Wendy A., Naiki, Akiyo, Ngo, Kang Min, Niissalo, Matti, Ranasinghe, Subhani, Repin, Rimi, Rustiami, Himmah, Simbiak, Victor I., Sukri, Rahayu S., Sunarti, Siti, Trethowan, Liam A., Trias-Blasi, Anna, Vasconcelos, Thais N. C.Aff2, Aff27, Wanma, Jimmy F., Widodo, Pudji, Wijesundara, Douglas Siril A., Worboys, Stuart, Yap, Jing Wei, Yong, Kien Thai, Khew, Gillian S. W.Aff1, Aff32, Salojärvi, JarkkoAff4, Aff5, Michael, Todd P., Middleton, David J., Burslem, David F. R. P., Lindqvist, CharlotteAff4, Aff6, IDs4146702232637x_cor61, Lucas, Eve J.Aff2, IDs4146702232637x_cor62, Albert, Victor A.Aff4, Aff6, IDs4146702232637x_cor63
Superior Title: Nature Communications. 13(1)
Authors: Hu, Guibing, Feng, Junting, Xiang, Xu, Wang, Jiabao, Salojärvi, Jarkko, Liu, Chengming, Wu, Zhenxian, Zhang, Jisen, Liang, Xinming, Jiang, Zide, Liu, Wei, Ou, Liangxi, Li, Jiawei, Fan, Guangyi, Mai, Yingxiao, Chen, Chengjie, Zhang, Xingtan, Zheng, Jiakun, Zhang, Yanqing, Peng, Hongxiang, Yao, Lixian, Wai, Ching Man, Luo, Xinping, Fu, Jiaxin, Tang, Haibao, Lan, Tianying, Lai, Biao, Sun, Jinhua, Wei, Yongzan, Li, Huanling, Chen, Jiezhen, Huang, Xuming, Yan, Qian, Liu, Xin, McHale, Leah K., Rolling, William, Guyot, Romain, Sankoff, David, Zheng, Chunfang, Albert, Victor A.Aff4, Aff12, IDs41588021009713_cor40, Ming, RayAff10, IDs41588021009713_cor41, Chen, HoubinAff1, IDs41588021009713_cor42, Xia, RuiAff1, IDs41588021009713_cor43, Li, JianguoAff1, IDs41588021009713_cor44
Superior Title: Nature Genetics. 54(1):73-83
Authors: Rendón-Anaya, Martha, Ibarra-Laclette, Enrique, Méndez-Bravo, Alfonso, Lan, Tianying, Zheng, Chunfang, Carretero-Paulet, Lorenzo, Perez-Torres, Claudia Anahí, Chacón-López, Alejandra, Hernandez-Guzmán, Gustavo, Chang, Tien-Hao, Farr, Kimberly M., Barbazuk, W. Brad, Chamala, Srikar, Mutwil, Marek, Shivhare, Devendra, Alvarez-Ponce, David, Mitter, Neena, Hayward, Alice, Fletcher, Stephen, Rozas, Julio, Gracia, Alejandro Sánchez, Kuhn, David, Barrientos-Priego, Alejandro F., Salojärvi, Jarkko, Librado, Pablo, Sankoff, David, Herrera-Estrella, Alfredo, Albert, Victor A., Herrera-Estrella, Luis
Superior Title: Proceedings of the National Academy of Sciences of the United States of America, 2019 Aug . 116(34), 17081-17089.
Access URL: https://www.jstor.org/stable/26850583
Authors: Salojärvi, Jarkko, Rambani, Aditi, Yu, Zhe, Guyot, Romain, Strickler, Susan, Lepelley, Maud, Wang, Cui, Rajaraman, Sitaram, Rastas, Pasi, Zheng, Chunfang, Muñoz, Daniella Santos, Meidanis, João, Paschoal, Alexandre Rossi, Bawin, Yves, Krabbenhoft, Trevor J., Wang, Zhen Qin, Fleck, Steven J., Aussel, Rudy, Bellanger, Laurence, Charpagne, Aline, Fournier, Coralie, Kassam, Mohamed, Lefebvre, Gregory, Métairon, Sylviane, Moine, Déborah, Rigoreau, Michel, Stolte, Jens, Hamon, Perla, Couturon, Emmanuel, Tranchant-Dubreuil, Christine, Mukherjee, Minakshi, Lan, Tianying, Engelhardt, Jan, Stadler, Peter, Correia De Lemos, Samara Mireza, Suzuki, Suzana Ivamoto, Sumirat, Ucu, Wai, Ching Man, Dauchot, Nicolas, Orozco-Arias, Simon, Garavito, Andrea, Kiwuka, Catherine, Musoli, Pascal, Nalukenge, Anne, Guichoux, Erwan, Reinout, Havinga, Smit, Martin, Carretero-Paulet, Lorenzo, Filho, Oliveiro Guerreiro, Braghini, Masako Toma, Padilha, Lilian, Sera, Gustavo Hiroshi, Ruttink, Tom, Henry, Robert, Marraccini, Pierre, Van de Peer, Yves, Andrade, Alan, Domingues, Douglas, Giuliano, Giovanni, Mueller, Lukas, Pereira, Luiz Filipe, Plaisance, Stephane, Poncet, Valerie, Rombauts, Stephane, Sankoff, David, Albert, Victor A., Crouzillat, Dominique, de Kochko, Alexandre, Descombes, Patrick
Superior Title: Nature Genetics; April 2024, Vol. 56 Issue: 4 p721-731, 11p
Authors: Cui, Fuqiang, Ye, Xiaoxue, Li, Xiaoxiao, Yang, Yifan, Hu, Zhubing, Overmyer, Kirk, Brosche, Mikael, Yu, Hong, Salojärvi, Jarkko
Contributors: University of Helsinki, Organismal and Evolutionary Biology Research Programme, Biosciences, Viikki Plant Science Centre (ViPS), Plant-Fungal Interactions Group, Plant Biology, Plant stress and natural variation, Bioinformatics for Molecular Biology and Genomics (BMBG)
Subject Terms: 1181 Ecology, evolutionary biology, Vaccinium darrowii, Adaptation, Blueberry, Cuticle, Genome sequence, Subtropical
File Description: application/pdf
Relation: https://doi.org/10.1016/j.xplc.2022.100307; Plant communications; Cui , F , Ye , X , Li , X , Yang , Y , Hu , Z , Overmyer , K , Brosche , M , Yu , H & Salojärvi , J 2022 , ' Chromosome-level genome assembly of the diploid blueberry Vaccinium darrowii provides insights into its subtropical adaptation and cuticle synthesis ' , Plant communications , vol. 3 , no. 4 , 100307 . https://doi.org/10.1016/j.xplc.2022.100307; PURE: 226412553; PURE UUID: 02b6108d-3b13-4c48-b153-e01b9e387a43; WOS: 000844042700004; ORCID: /0000-0002-7398-3453/work/118750735; ORCID: /0000-0002-1135-2496/work/118752080; http://hdl.handle.net/10138/347896
Authors: Safdari, Pezhman, Höckerstedt, Layla, Brosche, Mikael, Salojärvi, Jarkko, Laine, Anna Liisa
Contributors: Organismal and Evolutionary Biology Research Programme, Bioinformatics for Molecular Biology and Genomics (BMBG), Biosciences, Plant Biology, Viikki Plant Science Centre (ViPS), Plant stress and natural variation, Doctoral school in biological, environmental and food sciences
Subject Terms: 1181 Ecology, evolutionary biology, 11831 Plant biology
File Description: application/pdf
Relation: https://doi.org/10.3389/fpls.2021.675760; Frontiers in plant science; Safdari , P , Höckerstedt , L , Brosche , M , Salojärvi , J & Laine , A L 2021 , ' Genotype-Specific Expression and NLR Repertoire Contribute to Phenotypic Resistance Diversity in Plantago lanceolata ' , Frontiers in plant science , vol. 12 , 675760 . https://doi.org/10.3389/fpls.2021.675760; PURE: 174468062; PURE UUID: 07324c8d-d35d-4b14-bd16-0e0a5c3857ab; Scopus: 85111350158; ORCID: /0000-0002-1135-2496/work/108864970; http://hdl.handle.net/10138/340874
Authors: Lan, Tianying, Leppälä, Kalle Matias, Tomlin, Crystal, Talbot, Sandra L., Sage, George K., Farley, Sean D., Shideler, Richard T., Bachmann, Lutz, Wiig, Øystein, Albert, Victor A., Salojärvi, Jarkko, Mailund, Thomas, Drautz-Moses, Daniela I., Schuster, Stephan C., Herrera-Estrella, Luis, Lindqvist, Charlotte
Contributors: Organismal and Evolutionary Biology Research Programme, University of Helsinki
Subject Terms: 1181 Ecology, evolutionary biology, bear evolution, climate change, comparative genomics, hybridization, Ursus, SEA-ICE, PHYLOGEOGRAPHY, POPULATION HISTORY, ANCIENT ADMIXTURE, REVEAL, GENE FLOW, BROWN BEARS, URSUS-ARCTOS, GRIZZLY BEARS
File Description: application/pdf
Relation: https://doi.org/10.1073/pnas.2200016119; Proceedings of the National Academy of Sciences of the United States of America; Lan , T , Leppälä , K M , Tomlin , C , Talbot , S L , Sage , G K , Farley , S D , Shideler , R T , Bachmann , L , Wiig , Ø , Albert , V A , Salojärvi , J , Mailund , T , Drautz-Moses , D I , Schuster , S C , Herrera-Estrella , L & Lindqvist , C 2022 , ' Insights into bear evolution from a Pleistocene polar bear genome ' , Proceedings of the National Academy of Sciences of the United States of America , vol. 119 , no. 24 , 2200016119 . https://doi.org/10.1073/pnas.2200016119; PURE: 227258738; PURE UUID: bcfa56f1-34b2-4454-8677-6c03b6bf3156; Scopus: 85131345690; PubMed: 35666863; WOS: 000852907500001; http://hdl.handle.net/10138/348204
Authors: Berhaman, Ahmad, Tomlin, Crystal M., Cowie, Ian D., Michael, Todd P., Middleton, David J., Mustaqim, Wendy A., Wijesundara, Douglas Siril A., Choo, Le Min, Fleck, Steven J., Khew, Gillian S. W., Widodo, Pudji, Leong, Paul K. F., Goyder, David J., Gray, Bruce, Ngo, Kang Min, Bone, Ruth E., Yap, Jing Wei, Trethowan, Liam A., Trias-Blasi, Anna, Rajaraman, Sitaram, Lindqvist, Charlotte, Ardi, Wisnu H., Wanma, Jimmy F., Ibrahim, Ali, Lim, Wei Hao, Simbiak, Victor I., Forster, Paul I., Athen, Parusuraman, Lai, Joseph T. K., Armstrong, Kate, Salojärvi, Jarkko, Lee, Serena M. L., Burslem, David F. R. P., Koh, Sin Lan, Cho, Nicholas R. W., Naiki, Akiyo, Mahyuni, Ridha, Ibrahim, Bazilah, Worboys, Stuart, Crayn, Darren, Lucas, Eve J., Niissalo, Matti, Yong, Kien Thai, Kintamani, Endang, McDonald, William J. F., Ahmad, Joffre Ali, Cheek, Martin, Kathriarachchi, Hashendra S., Girmansyah, Deden, Sukri, Rahayu S., Metali, Faizah, Repin, Rimi, Kalat, Muhammad Ariffin, Lum, Shawn K. Y., Ranasinghe, Subhani, Low, Yee Wen, Rustiami, Himmah, Heatubun, Charlie D., Sunarti, Siti, Jayasinghe, Himesh D., Albert, Victor A., Vasconcelos, Thais N. C., Ford, Andrew J.
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Subject Terms: Syzygium, Evolutionary genetics, Phylogenomics, Polyploidy in plants, Comparative genomics
Relation: Nature Communications; https://doi.org/10.1038/s41467-022-32637-x
Availability: https://doi.org/10.1038/s41467-022-32637-x
Authors: Liu, Jiming, Gao, Shilun, Xu, Yuanyuan, Wang, Mianzhi, Ngiam, Jia Jun, Rui Wen, Nicholas Cho, Yi, Joan Jong Jing, Weng, Xuehuang, Jia, Liming, Salojärvi, Jarkko
Superior Title: Front Plant Sci
Subject Terms: Plant Science
Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9171133/; http://dx.doi.org/10.3389/fpls.2022.857993
Authors: Lan, Tianying, Leppälä, Kalle, Tomlin, Crystal, Talbot, Sandra L, Sage, George K., Farley, Sean, Shideler, Richard T., Bachmann, Lutz, Wiig, Øystein, Albert, Victor A, Salojärvi, Jarkko, Mailund, Thomas, Drautz-Moses, Daniela I., Herrera-Estrella, Luis, Lindqvist, Charlotte
Superior Title: 0027-8424.
Relation: Lan, Tianying Leppälä, Kalle Tomlin, Crystal Talbot, Sandra L Sage, George K. Farley, Sean Shideler, Richard T. Bachmann, Lutz Wiig, Øystein Albert, Victor A Salojärvi, Jarkko Mailund, Thomas Drautz-Moses, Daniela I. Herrera-Estrella, Luis Lindqvist, Charlotte . Insights into bear evolution from a Pleistocene polar bear genome. Proceedings of the National Academy of Sciences of the United States of America. 2022, 119; http://hdl.handle.net/10852/98172; 2091585; info:ofi/fmt:kev:mtx:ctx&ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Proceedings of the National Academy of Sciences of the United States of America&rft.volume=119&rft.spage=&rft.date=2022; Proceedings of the National Academy of Sciences of the United States of America; 119; 24; https://doi.org/10.1073/pnas.2200016119
Authors: Salojärvi, JarkkoAff3
Contributors: Rajora, Om P., Editor-in-ChiefAff1, Aff2
Superior Title: Population Genomics : Concepts, Approaches and Applications. :127-160
Authors: Alonso-Serra, Juan, Safronov, Omid, Lim, Kean-Jin, Fraser-Miller, Sara J., Blokhina, Olga B., Campilho, Ana, Chong, Sun-Li, Fagerstedt, Kurt, Haavikko, Raisa, Helariutta, Ykä, Immanen, Juha, Kangasjärvi, Jaakko, Kauppila, Tiina J., Lehtonen, Mari, Ragni, Laura, Rajaraman, Sitaram, Räsänen, Riikka-Marjaana, Safdari, Pezhman, Tenkanen, Maija, Yli-Kauhaluoma, Jari T., Teeri, Teemu H., Strachan, Clare J., Nieminen, Kaisa, Salojärvi, Jarkko
Superior Title: The New Phytologist, 2019 Jun 01. 222(4), 1816-1831.
Access URL: https://www.jstor.org/stable/26675935
Authors: Sierla, Maija, Hõrak, Hanna, Overmyer, Kirk, Waszczak, Cezary, Yarmolinsky, Dmitry, Maierhofer, Tobias, Vainonen, Julia P., Salojärvi, Jarkko, Denessiouk, Konstantin, Laanemets, Kristiina, Tõldsepp, Kadri, Vahisalu, Triin, Gauthier, Adrien, Puukko, Tuomas, Paulin, Lars, Auvinen, Petri, Geiger, Dietmar, Hedrich, Rainer, Kollist, Hannes, Kangasjärvi, Jaakko
Superior Title: The Plant Cell, 2018 Nov 01. 30(11), 2813-2837.
Access URL: https://www.jstor.org/stable/26557597