Authors: Guan, Hang, Caggìa, Veronica, Gómez-Chamorro, Andrea, Fischer, Daniela, Coll-Crespí, Miquel, Liu, Xiaowen^{Aff1, Aff4}, Chávez-Capilla, Teresa, Schlaeppi, Klaus^{Aff2, Aff5}, Ramette, Alban, Mestrot, Adrien, Bigalke, Moritz^{Aff1, Aff6, IDs12403023005936_cor11}

Superior Title: Exposure and Health. :1-16

Authors: Abela, Irene A, Hauser, Anthony, Schwarzmüller, Magdalena, Pasin, Chloé, Kusejko, Katharina, Epp, Selina, Cavassini, Matthias, Battegay, Manuel, Rauch, Andri, Calmy, Alexandra, Notter, Julia, Bernasconi, Enos, Fux, Christoph A, Leuzinger, Karoline, Perreau, Matthieu, Ramette, Alban, Gottschalk, Jochen, Schindler, Eméry, Wepf, Alexander, Marconato, Maddalena, Manz, Markus G, Frey, Beat M, Braun, Dominique L, Huber, Michael, Günthard, Huldrych F, Trkola, Alexandra, Kouyos, Roger D, Swiss HIV Cohort Study

Superior Title: Abela, Irene A; Hauser, Anthony; Schwarzmüller, Magdalena; Pasin, Chloé; Kusejko, Katharina; Epp, Selina; Cavassini, Matthias; Battegay, Manuel; Rauch, Andri; Calmy, Alexandra; Notter, Julia; Bernasconi, Enos; Fux, Christoph A; Leuzinger, Karoline; Perreau, Matthieu; Ramette, Alban; Gottschalk, Jochen; Schindler, Eméry; Wepf, Alexander; Marconato, Maddalena; Manz, Markus G; Frey, Beat M; Braun, Dominique L; Huber, Michael; Günthard, Huldrych F; Trkola, Alexandra; Kouyos, Roger D; Swiss HIV Cohort Study (2024). Deciphering factors linked with reduced SARS-CoV-2 susceptibility in the Swiss HIV Cohort Study. Journal of Infectious Diseases:Epub ahead of print.

Subject Terms: Medical Clinic, Institute of Medical Virology, Clinic for Infectious Diseases, 570 Life sciences, biology, 610 Medicine & health

File Description: application/pdf

Relation: https://www.zora.uzh.ch/id/eprint/257077/1/38227786PubMedPP.pdf; info:pmid/38227786; urn:issn:0022-1899

Availability: https://doi.org/10.5167/uzh-25707710.1093/infdis/jiae002
https://www.zora.uzh.ch/id/eprint/257077/
https://www.zora.uzh.ch/id/eprint/257077/1/38227786PubMedPP.pdf

Authors: Terrazos Miani, Miguel A, Borcard, Loïc, Gempeler, Sonja, Baumann, Christian, Bittel, Pascal, Leib, Stephen L, Neuenschwander, Stefan, Ramette, Alban Nicolas

Subject Terms: 570 Life sciences, biology, 610 Medicine & health

Relation: https://dx.doi.org/10.3390/pathogens13010061

Availability: https://doi.org/10.48350/19197710.3390/pathogens13010061
https://boris.unibe.ch/191977/

Authors: Neves, Aitana, Walther, Daniel, Martin-Campos, Trinidad, Barbie, Valerie, Bertelli, Claire, Blanc, Dominique, Bouchet, Gérard, Erard, Frédéric, Greub, Gilbert, Hirsch, Hans H, Huber, Michael, Kaiser, Laurent, Leib, Stephen L, Leuzinger, Karoline, Lazarevic, Vladimir, Mäusezahl, Mirjam, Molina, Jorge, Neher, Richard A, Perreten, Vincent, Ramette, Alban, Roloff, Tim, Schrenzel, Jacques, Seth-Smith, Helena M B, Stephan, Roger, Terumalai, Dillenn, Wegner, Fanny, Egli, Adrian

Superior Title: Neves, Aitana; Walther, Daniel; Martin-Campos, Trinidad; Barbie, Valerie; Bertelli, Claire; Blanc, Dominique; Bouchet, Gérard; Erard, Frédéric; Greub, Gilbert; Hirsch, Hans H; Huber, Michael; Kaiser, Laurent; Leib, Stephen L; Leuzinger, Karoline; Lazarevic, Vladimir; Mäusezahl, Mirjam; Molina, Jorge; Neher, Richard A; Perreten, Vincent; Ramette, Alban; Roloff, Tim; Schrenzel, Jacques; Seth-Smith, Helena M B; Stephan, Roger; Terumalai, Dillenn; Wegner, Fanny; Egli, Adrian (2023). The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata. Microbial Genomics, 9(5):mgen001001.

Subject Terms: Institute of Medical Microbiology, Institute of Medical Virology, Institute of Food Safety and Hygiene, 610 Medicine & health, 570 Life sciences, biology, antibiotic resistance, bacteria, bioinformatics, database, epidemiology, fungi, molecular surveillance, outbreaks, research, sequencing, typing, virulence, virus

File Description: application/pdf

Relation: https://www.zora.uzh.ch/id/eprint/239640/1/ZORA_239640.pdf; info:pmid/37171846; urn:issn:2057-5858

Availability: https://doi.org/10.5167/uzh-23964010.1099/mgen.0.001001
https://www.zora.uzh.ch/id/eprint/239640/
https://www.zora.uzh.ch/id/eprint/239640/1/ZORA_239640.pdf

Authors: Anderegg, Nanina, Schwab, Tiana, Borcard, Loïc, Mugglin, Catrina, Keune-Dübi, Bettina, Ramette, Alban, Fenner, Lukas

Superior Title: Anderegg, Nanina; Schwab, Tiana; Borcard, Loïc; Mugglin, Catrina; Keune-Dübi, Bettina; Ramette, Alban; Fenner, Lukas (2023). Population-based SARS-CoV-2 whole genome sequencing and contact tracing during the COVID-19 pandemic in Switzerland. Journal of infectious diseases, 228(3), pp. 251-260. Oxford University Press 10.1093/infdis/jiad074

Subject Terms: 610 Medicine & health, 360 Social problems & social services, 570 Life sciences, biology

File Description: application/pdf

Relation: https://boris.unibe.ch/180775/

Availability: https://doi.org/10.1093/infdis/jiad074
https://boris.unibe.ch/180775/1/jiad074.pdf
https://boris.unibe.ch/180775/

Authors: Bigi, Sandra, Ramette, Alban, Barbani, Maria Teresa, Bieri, Andreas, Hoffmann, Angelika, Aebi, Christoph

Superior Title: Bigi, Sandra; Ramette, Alban; Barbani, Maria Teresa; Bieri, Andreas; Hoffmann, Angelika; Aebi, Christoph (2023). Acute flaccid myelitis in Switzerland - association with enterovirus D68. Swiss medical weekly, 153, p. 40045. EMH Schweizerischer Ärzteverlag 10.57187/smw.2023.40045

Subject Terms: 610 Medicine & health, 570 Life sciences, biology, 360 Social problems & social services

File Description: application/pdf

Relation: https://boris.unibe.ch/178811/

Availability: https://doi.org/10.57187/smw.2023.40045
https://boris.unibe.ch/178811/1/smw-153-40045.pdf
https://boris.unibe.ch/178811/

Authors: Scheier, Thomas C., Franz, J., Boumasmoud, Mathilde, id_orcid:0 000-0003-2265-3902, Andreoni, F., Chakrakodi, B., Duvnjak, B., Egli, A., Zingg, W., Ramette, Alban, Wolfensberger, A., Kouyos, R.D., Brugger, Silvio Daniel

Superior Title: Microbiology Spectrum

Subject Terms: FT-IR spectroscopy, IR Biotyper, vancomycin-resistant enterococci, outbreak investigation

File Description: application/application/pdf

Relation: info:eu-repo/semantics/altIdentifier/wos/001073885700001; http://hdl.handle.net/20.500.11850/636552

Availability: https://doi.org/20.500.11850/636552
https://doi.org/10.3929/ethz-b-000636552
https://doi.org/10.1128/spectrum.00984-23
https://hdl.handle.net/20.500.11850/636552

Authors: Lux, Janine^{Aff1, Aff2}, Holivololona, Lalaina, San Millan Gutierrez, Raquel, Hilty, Markus, Ramette, Alban, Heller, Manfred, Hathaway, Lucy J.^{Aff1, IDs4159802226838z_cor7}

Superior Title: Scientific Reports. 12(1)

Authors: Banholzer, Nicolas, Jent, Philipp, Bittel, Pascal, Zürcher, Kathrin, Furrer, Lavinia, Bertschinger, Simon, Weingartner, Ernest, Ramette, Alban, Egger, Matthias, Hascher, Tina, Fenner, Lukas

Superior Title: Open Forum Infectious Diseases; Apr2024, Vol. 11 Issue 4, p1-7, 7p

Subject Terms: RESPIRATORY infections, HEPA filters, SALIVA analysis, AIR filters, MICROBIOLOGICAL aerosols

Authors: Wegner, Fanny, Cabrera-Gil, Blanca, Araud, Tanguy, Beckmann, Christiane, Beerenwinkel, Niko, id_orcid:0 000-0002-0573-6119, Bertelli, Claire, Carrara, Matteo, Cerutti, Lorenzo, Chen, Chaoran, id_orcid:0 000-0002-8763-2937, Cordey, Samuel, Dumoulin, Alexis, du Plessis, Louis, Friedli, Marc, Gerth, Yannick, Greub, Gilbert, Härri, Adrian, Hirsch, Hans, Howald, Cedric, Huber, Michael, Imhof, Alexander, Kaiser, Laurent, Kufner, Verena, Leib, Stephen L., Leuzinger, Karoline, Lleshi, Etleva, Martinetti Lucchini, Gladys, Mäusezahl, Mirjam, Moraz, Milo, Neher, Richard, Nolte, Oliver, Ramette, Alban, Redondo, Maurice, Risch, Lorenz, Rohner, Lionel, Roloff, Tim, Schläpfer, Pascal, Schneider, Katrin, Singer, Franziska, id_orcid:0 000-0002-6017-1595, Spina, Valeria, Stadler, Tanja, id_orcid:0 000-0001-6431-535X, Studer, Erik, Topolsky, Ivan, id_orcid:0 000-0002-7561-0810, Trkola, Alexandra, Walther, Daniel, Wohlwend, Nadia, Zehnder, Cinzia, Neves, Aitana, Egli, Adrian, SPSP Consortium

Superior Title: medRxiv

File Description: application/application/pdf

Relation: http://hdl.handle.net/20.500.11850/653093

Availability: https://doi.org/20.500.11850/65309310.3929/ethz-b-00065309310.1101/2023.08.28.23294715
https://hdl.handle.net/20.500.11850/653093

Authors: Banholzer, Nicolas, Jent, Philipp, Bittel, Pascal, Zürcher, Kathrin, Furrer, Lavinia, Bertschinger, Simon, Weingartner, Ernest, Ramette, Alban, Egger, Matthias, Hascher, Tina, Fenner, Lukas

Subject Terms: 610 Medicine & health, 360 Social problems & social services, 370 Education, 570 Life sciences, biology

Relation: https://dx.doi.org/10.1101/2023.12.29.23300635

Availability: https://doi.org/10.48350/19198610.1101/2023.12.29.23300635
https://boris.unibe.ch/191986/

Authors: Terrazos Miani, Miguel A., Borcard, Loïc, Gempeler, Sonja, Baumann, Christian, Bittel, Pascal, Leib, Stephen L., Neuenschwander, Stefan, Ramette, Alban

Subject Terms: 570 Life sciences, biology, 610 Medicine & health

Relation: https://dx.doi.org/10.1101/2023.03.10.23287094

Availability: https://doi.org/10.48350/19053510.1101/2023.03.10.23287094
https://boris.unibe.ch/190535/

Authors: Borcard, Loïc, Gempeler, Sonja, Terrazos Miani, Miguel A., Baumann, Christian, Grädel, Carole, Dijkman, Ronald, Suter-Riniker, Franziska, Leib, Stephen L., Bittel, Pascal, Neuenschwander, Stefan, Ramette, Alban

Superior Title: Frontiers in Virology ; volume 2 ; ISSN 2673-818X

Availability: https://doi.org/10.3389/fviro.2022.840952

Authors: Chaudron, Sandra E, Leemann, Christine, Kusejko, Katharina, Nguyen, Huyen, Tschumi, Nadine, Marzel, Alex, Huber, Michael, Böni, Jürg, Perreau, Matthieu, Klimkait, Thomas, Yerly, Sabine, Ramette, Alban, Hirsch, Hans H, Rauch, Andri, Calmy, Alexandra, Vernazza, Pietro, Bernasconi, Enos, Cavassini, Matthias, Metzner, Karin J, Kouyos, Roger D, Günthard, Huldrych F

Superior Title: Chaudron, Sandra E; Leemann, Christine; Kusejko, Katharina; Nguyen, Huyen; Tschumi, Nadine; Marzel, Alex; Huber, Michael; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Ramette, Alban; Hirsch, Hans H; Rauch, Andri; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Cavassini, Matthias; Metzner, Karin J; Kouyos, Roger D; Günthard, Huldrych F (2022). A Systematic Molecular Epidemiology Screen Reveals Numerous Human Immunodeficiency Virus (HIV) Type 1 Superinfections in the Swiss HIV Cohort Study. Journal of Infectious Diseases, 226(7):1256-1266.

Subject Terms: Institute of Medical Virology, Clinic for Infectious Diseases, 610 Medicine & health

File Description: application/pdf

Relation: https://www.zora.uzh.ch/id/eprint/223153/2/ZORA_223153_aM.pdf; https://www.zora.uzh.ch/id/eprint/223153/1/ZORA_223153.pdf; info:pmid/35485458; urn:issn:0022-1899

Availability: https://doi.org/10.5167/uzh-22315310.1093/infdis/jiac166
https://www.zora.uzh.ch/id/eprint/223153/
https://www.zora.uzh.ch/id/eprint/223153/2/ZORA_223153_aM.pdf
https://www.zora.uzh.ch/id/eprint/223153/1/ZORA_223153.pdf

Authors: Kusejko, Katharina, Tschumi, Nadine, Chaudron, Sandra E, Nguyen, Huyen, Battegay, Manuel, Bernasconi, Enos, Böni, Jürg, Huber, Michael, Calmy, Alexandra, Cavassini, Matthias, Egle, Alexander, Grabmeier-Pfistershammer, Katharina, Haas, Bernhard, Hirsch, Hans H, Klimkait, Thomas, Öllinger, Angela, Perreau, Matthieu, Ramette, Alban, Flury, Baharak Babouee, Sarcletti, Mario, Scherrer, Alexandra, Schmid, Patrick, Yerly, Sabine, Zangerle, Robert, Günthard, Huldrych F, Kouyos, Roger D

Superior Title: Kusejko, Katharina; Tschumi, Nadine; Chaudron, Sandra E; Nguyen, Huyen; Battegay, Manuel; Bernasconi, Enos; Böni, Jürg; Huber, Michael; Calmy, Alexandra; Cavassini, Matthias; Egle, Alexander; Grabmeier-Pfistershammer, Katharina; Haas, Bernhard; Hirsch, Hans H; Klimkait, Thomas; Öllinger, Angela; Perreau, Matthieu; Ramette, Alban; Flury, Baharak Babouee; Sarcletti, Mario; Scherrer, Alexandra; Schmid, Patrick; Yerly, Sabine; Zangerle, Robert; Günthard, Huldrych F; Kouyos, Roger D (2022). Similar But Different: Integrated Phylogenetic Analysis of Austrian and Swiss HIV-1 Sequences Reveal Differences in Transmission Patterns of the Local HIV-1 Epidemics. Journal of Acquired Immune Deficiency Syndromes, 90(4):e4-e12.

Subject Terms: Institute of Medical Virology, Clinic for Infectious Diseases, 610 Medicine & health

File Description: application/pdf

Relation: https://www.zora.uzh.ch/id/eprint/223134/1/Similar_But_Different__Integrated_Phylogenetic.7.pdf; https://www.zora.uzh.ch/id/eprint/223134/9/ZORA_223134_aM.pdf; info:pmid/35298446; urn:issn:1525-4135

Availability: https://doi.org/10.5167/uzh-22313410.1097/QAI.0000000000002949
https://www.zora.uzh.ch/id/eprint/223134/
https://www.zora.uzh.ch/id/eprint/223134/1/Similar_But_Different__Integrated_Phylogenetic.7.pdf
https://www.zora.uzh.ch/id/eprint/223134/9/ZORA_223134_aM.pdf

Authors: Wegner, Fanny, Roloff, Tim, Huber, Michael, Cordey, Samuel, Ramette, Alban, Gerth, Yannick, Bertelli, Claire, Stange, Madlen, Seth-Smith, Helena M B, Mari, Alfredo, Leuzinger, Karoline, Cerutti, Lorenzo, Harshman, Keith, Xenarios, Ioannis, Le Mercier, Philippe, Bittel, Pascal, Neuenschwander, Stefan, Opota, Onya, Fuchs, Jonas, Panning, Marcus, Michel, Charlotte, Hallin, Marie, Demuyser, Thomas, De Mendonca, Ricardo, Savelkoul, Paul, Dingemans, Jozef, van der Veer, Brian, Boers, Stefan A, Claas, Eric C J, Coolen, Jordy P M, Melchers, Willem J G, Gunell, Marianne, Kallonen, Teemu, Vuorinen, Tytti, Hakanen, Antti J, Bernhoff, Eva, Hetland, Marit Andrea Klokkhammer, Golan Berman, Hadar, Adar, Sheera, Moran-Gilad, Jacob, Wolf, Dana G, Leib, Stephen L, Nolte, Oliver, Kaiser, Laurent, Schmutz, Stefan, Kufner, Verena, Zaheri, Maryam, Trkola, Alexandra, Aamot, Hege Vangstein, Hirsch, Hans H

Superior Title: Wegner , F , Roloff , T , Huber , M , Cordey , S , Ramette , A , Gerth , Y , Bertelli , C , Stange , M , Seth-Smith , H M B , Mari , A , Leuzinger , K , Cerutti , L , Harshman , K , Xenarios , I , Le Mercier , P , Bittel , P , Neuenschwander , S , Opota , O , Fuchs , J , Panning , M , Michel , C , Hallin , M , Demuyser , T , De Mendonca , R ....

Subject Terms: COVID-19, Humans, Laboratories, Clinical, Pilot Projects, SARS-CoV-2, whole-genome sequencing, ring trial, NGS, external quality assessment

Availability: https://doi.org/10.1128/JCM.01698-21
https://cris.maastrichtuniversity.nl/en/publications/9c989da9-cbbf-4921-a729-b6e792fc29a5

Authors: Wegner, Fanny, Roloff, Tim, Huber, Michael, Cordey, Samuel, Ramette, Alban, Gerth, Yannick, Bertelli, Claire, Stange, Madlen, Seth-Smith, Helena M. B., Mari, Alfredo, Leuzinger, Karoline, Cerutti, Lorenzo, Harshman, Keith, Xenarios, Ioannis, Le Mercier, Philippe, Bittel, Pascal, Neuenschwander, Stefan, Opota, Onya, Fuchs, Jonas, Panning, Marcus, Michel, Charlotte, Hallin, Marie, Demuyser, Thomas, De Mendonca, Ricardo, Savelkoul, Paul, Dingemans, Jozef, van der Veer, Brian, Boers, Stefan A., Claas, Eric C. J., Coolen, Jordy P. M., Melchers, Willem J. G., Gunell, Marianne, Kallonen, Teemu, Vuorinen, Tytti, Hakanen, Antti J., Bernhoff, Eva, Hetland, Marit Andrea Klokkhammer, Golan Berman, Hadar, Adar, Sheera, Moran-Gilad, Jacob, Wolf, Dana G., Leib, Stephen L., Nolte, Oliver, Kaiser, Laurent, Schmutz, Stefan, Kufner, Verena, Zaheri, Maryam, Trkola, Alexandra, Aamot, Hege Vangstein, Hirsch, Hans H., Greub, Gilbert, Egli, Adrian

Superior Title: ISSN: 0095-1137 ; Journal of clinical microbiology, vol. 60, no. 1 (2022) e0169821.

Subject Terms: info:eu-repo/classification/ddc/616, NGS, External quality assessment, Ring trial, Whole-genome sequencing

Relation: info:eu-repo/semantics/altIdentifier/pmid/34757834; https://archive-ouverte.unige.ch/unige:162896; unige:162896

Availability: https://doi.org/10.1128/JCM.01698-21
https://archive-ouverte.unige.ch/unige:162896

Authors: Ramírez Mena, Adrià, Tine, Judicaël M, Fortes, Louise, Ndiaye, Ousseynou, Ka, Daye, Ngom, Ndeye Fatou, Ramette, Alban Nicolas, Bittel, Pascal, Seydi, Moussa, Wandeler, Gilles

Superior Title: Ramírez Mena, Adrià; Tine, Judicaël M; Fortes, Louise; Ndiaye, Ousseynou; Ka, Daye; Ngom, Ndeye Fatou; Ramette, Alban Nicolas; Bittel, Pascal; Seydi, Moussa; Wandeler, Gilles (2022). Hepatitis B screening practices and viral control among persons living with HIV in urban Senegal. Journal of viral hepatitis, 29(1), pp. 60-68. Blackwell Science 10.1111/jvh.13615

Subject Terms: 360 Social problems & social services, 610 Medicine & health

File Description: application/pdf

Relation: https://boris.unibe.ch/159993/

Availability: https://doi.org/10.1111/jvh.13615
https://boris.unibe.ch/159993/1/jvh.13615.pdf
https://boris.unibe.ch/159993/

Authors: Duran Ramirez, Jessy J, Ballouz, Tala, Nguyen, Huyen, Kusejko, Katharina, Chaudron, Sandra E, Huber, Michael, Hirsch, Hans H, Perreau, Matthieu, Ramette, Alban, Yerly, Sabine, Cavassini, Matthias, Stöckle, Marcel, Furrer, Hansjakob, Vernazza, Pietro, Bernasconi, Enos, Günthard, Huldrych F, Kouyos, Roger D

Superior Title: Duran Ramirez, Jessy J; Ballouz, Tala; Nguyen, Huyen; Kusejko, Katharina; Chaudron, Sandra E; Huber, Michael; Hirsch, Hans H; Perreau, Matthieu; Ramette, Alban; Yerly, Sabine; Cavassini, Matthias; Stöckle, Marcel; Furrer, Hansjakob; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D (2022). Increasing Frequency and Transmission of HIV-1 Non-B Subtypes among Men Who Have Sex with Men in the Swiss HIV Cohort Study. The journal of infectious diseases, 225(2), pp. 306-316. Oxford University Press 10.1093/infdis/jiab360

Subject Terms: 610 Medicine & health, 570 Life sciences, biology

File Description: application/pdf

Relation: https://boris.unibe.ch/157643/

Availability: https://doi.org/10.1093/infdis/jiab360
https://boris.unibe.ch/157643/1/jiab360.pdf
https://boris.unibe.ch/157643/

Authors: Kofler, Jacob, Ramette, Alban, Iseli, Patricia, Stauber, Lea, Fichtner, Jens, Droz, Sara, Zihler Berner, Annina, Meier, Anna Bettina, Begert, Michelle, Negri, Sabine, Jachmann, Anne, Keller, Peter Michael, Staehelin, Cornelia, Grützmacher, Barbara

Superior Title: Kofler, Jacob; Ramette, Alban; Iseli, Patricia; Stauber, Lea; Fichtner, Jens; Droz, Sara; Zihler Berner, Annina; Meier, Anna Bettina; Begert, Michelle; Negri, Sabine; Jachmann, Anne; Keller, Peter Michael; Staehelin, Cornelia; Grützmacher, Barbara (2022). Ongoing toxin-positive diphtheria outbreaks in a federal asylum centre in Switzerland, analysis July to September 2022. Eurosurveillance, 27(44) European Centre for Disease Prevention and Control 10.2807/1560-7917.ES.2022.27.44.2200811

Subject Terms: 610 Medicine & health, 570 Life sciences, biology

File Description: application/pdf

Relation: https://boris.unibe.ch/174520/

Availability: https://doi.org/10.2807/1560-7917.ES.2022.27.44.2200811
https://boris.unibe.ch/174520/1/eurosurv-27-44-1.pdf
https://boris.unibe.ch/174520/