Authors: Breschine Cummins, Francis C Motta, Robert C Moseley, Anastasia Deckard, Sophia Campione, Marcio Gameiro, Tomáš Gedeon, Konstantin Mischaikow, Steven B Haase

Superior Title: PLoS Computational Biology, Vol 18, Iss 10, p e1010145 (2022)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/55e1e7261831478a89eda5fc425d2f41

Authors: Marcio Gameiro, Tomáš Gedeon, Shane Kepley, Konstantin Mischaikow

Superior Title: PLoS Computational Biology, Vol 17, Iss 7, p e1009189 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/4e3fa112aaf9476398ffc49fdda9e05f

Authors: Rocky Diegmiller, Lun Zhang, Marcio Gameiro, Justinn Barr, Jasmin Imran Alsous, Paul Schedl, Stanislav Y Shvartsman, Konstantin Mischaikow

Superior Title: PLoS Computational Biology, Vol 17, Iss 2, p e1008711 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/62be1c007851437bbadeaa8318e00f40

Authors: Bree Cummins, Tomas Gedeon, Shaun Harker, Konstantin Mischaikow

Superior Title: Frontiers in Physiology, Vol 9 (2018)

Subject Terms: Boolean networks, switching systems, network dynamics, parameter space, database of dynamics, Physiology, QP1-981

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fphys.2018.00549/full; https://doaj.org/toc/1664-042X

Access URL: https://doaj.org/article/8aa1da428a4e43f8babbb4480d56ee9e

Authors: Tomáš Gedeon, Bree Cummins, Shaun Harker, Konstantin Mischaikow

Superior Title: PLoS Computational Biology, Vol 14, Iss 4, p e1006121 (2018)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/b94e27828fda41e3a5baa1f1a6480c1b

Authors: Justin Bush, Konstantin Mischaikow

Superior Title: Entropy, Vol 16, Iss 6, Pp 3379-3400 (2014)

Subject Terms: database for dynamics, conley theory, population model, Science, Astrophysics, QB460-466, Physics, QC1-999

File Description: electronic resource

Relation: http://www.mdpi.com/1099-4300/16/6/3379; https://doaj.org/toc/1099-4300

Access URL: https://doaj.org/article/7a6cbd7d6fba407788b49c66eb37c41e

Authors: Paul M. Alsing, Howard A. Blair, Matthew Corne, Gordon Jones, Warner A. Miller, Konstantin Mischaikow, Vidit Nanda

Superior Title: Axioms, Vol 6, Iss 3, p 24 (2017)

Subject Terms: persistent homology, Ricci flow, discrete Ricci flow, singularity detection, Mathematics, QA1-939

File Description: electronic resource

Relation: https://www.mdpi.com/2075-1680/6/3/24; https://doaj.org/toc/2075-1680

Access URL: https://doaj.org/article/0cdf03ec82c14e689f8db7e9647cd289

Authors: Rocky Diegmiller (10113838), Lun Zhang (3763507), Marcio Gameiro (10113841), Justinn Barr (6454430), Jasmin Imran Alsous (10113844), Paul Schedl (115354), Stanislav Y. Shvartsman (4442422), Konstantin Mischaikow (5131214)

Subject Terms: Medicine, Cell Biology, Genetics, Biotechnology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, model oocyte selection, Mapping parameter spaces, nonlinear, parameter regions, approach, exploration, circuit

Relation: https://figshare.com/articles/journal_contribution/Analysis_of_model_equations_and_algebraic_decomposition_for_parameter_space_topology_/13763755

Availability: https://doi.org/10.1371/journal.pcbi.1008711.s001

Authors: Marcio Gameiro (10113841), Tomáš Gedeon (2940378), Shane Kepley (11205273), Konstantin Mischaikow (5131214)

Subject Terms: Cell Biology, Genetics, Biotechnology, Science Policy, Infectious Diseases, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, network models, node networks, exhibit hysteresis, network designs, Rational design, phenotype, equation models, construction, design constraints, bistable switches, robustness

Relation: https://figshare.com/articles/figure/Fig_1_-/15077943

Availability: https://doi.org/10.1371/journal.pcbi.1009189.g001

Authors: Marcio Gameiro (10113841), Tomáš Gedeon (2940378), Shane Kepley (11205273), Konstantin Mischaikow (5131214)

Subject Terms: Cell Biology, Genetics, Biotechnology, Science Policy, Infectious Diseases, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, network models, node networks, exhibit hysteresis, network designs, Rational design, phenotype, equation models, construction, design constraints, bistable switches, robustness

Relation: https://figshare.com/articles/figure/Fig_2_-/15077946

Availability: https://doi.org/10.1371/journal.pcbi.1009189.g002

Authors: Marcio Gameiro (10113841), Tomáš Gedeon (2940378), Shane Kepley (11205273), Konstantin Mischaikow (5131214)

Subject Terms: Cell Biology, Genetics, Biotechnology, Science Policy, Infectious Diseases, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, network models, node networks, exhibit hysteresis, network designs, Rational design, phenotype, equation models, construction, design constraints, bistable switches, robustness

Relation: https://figshare.com/articles/figure/The_top_fourteen_regulatory_networks_by_hysteresis_score_/15077949

Availability: https://doi.org/10.1371/journal.pcbi.1009189.g003

Authors: Marcio Gameiro (10113841), Tomáš Gedeon (2940378), Shane Kepley (11205273), Konstantin Mischaikow (5131214)

Subject Terms: Cell Biology, Genetics, Biotechnology, Science Policy, Infectious Diseases, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, network models, node networks, exhibit hysteresis, network designs, Rational design, phenotype, equation models, construction, design constraints, bistable switches, robustness

Relation: https://figshare.com/articles/figure/Fig_4_-/15077955

Availability: https://doi.org/10.1371/journal.pcbi.1009189.g004

Authors: Marcio Gameiro (10113841), Tomáš Gedeon (2940378), Shane Kepley (11205273), Konstantin Mischaikow (5131214)

Subject Terms: Cell Biology, Genetics, Biotechnology, Science Policy, Infectious Diseases, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, network models, node networks, exhibit hysteresis, network designs, Rational design, phenotype, equation models, construction, design constraints, bistable switches, robustness

Relation: https://figshare.com/articles/figure/Fig_5_-/15077958

Availability: https://doi.org/10.1371/journal.pcbi.1009189.g005

Authors: Marcio Gameiro (10113841), Tomáš Gedeon (2940378), Shane Kepley (11205273), Konstantin Mischaikow (5131214)

Subject Terms: Cell Biology, Genetics, Biotechnology, Science Policy, Infectious Diseases, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, network models, node networks, exhibit hysteresis, network designs, Rational design, phenotype, equation models, construction, design constraints, bistable switches, robustness

Relation: https://figshare.com/articles/figure/Hysteresis_representation_in_DSGRN_/15077961

Availability: https://doi.org/10.1371/journal.pcbi.1009189.g006

Authors: Marcio Gameiro (10113841), Tomáš Gedeon (2940378), Shane Kepley (11205273), Konstantin Mischaikow (5131214)

Subject Terms: Cell Biology, Genetics, Biotechnology, Science Policy, Infectious Diseases, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, network models, node networks, exhibit hysteresis, network designs, Rational design, phenotype, equation models, construction, design constraints, bistable switches, robustness

Relation: https://figshare.com/articles/figure/STG_for_network_6_from_Fig_3_/15077964

Availability: https://doi.org/10.1371/journal.pcbi.1009189.g007

Authors: Marcio Gameiro (10113841), Tomáš Gedeon (2940378), Shane Kepley (11205273), Konstantin Mischaikow (5131214)

Subject Terms: Cell Biology, Genetics, Biotechnology, Science Policy, Infectious Diseases, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, network models, node networks, exhibit hysteresis, network designs, Rational design, phenotype, equation models, construction, design constraints, bistable switches, robustness

Relation: https://figshare.com/articles/figure/The_top_fourteen_regulatory_networks_by_descending_hysteresis_score_/15077970

Availability: https://doi.org/10.1371/journal.pcbi.1009189.g009

Authors: Marcio Gameiro (10113841), Tomáš Gedeon (2940378), Shane Kepley (11205273), Konstantin Mischaikow (5131214)

Subject Terms: Cell Biology, Genetics, Biotechnology, Science Policy, Infectious Diseases, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, network models, node networks, exhibit hysteresis, network designs, Rational design, phenotype, equation models, construction, design constraints, bistable switches, robustness

Relation: https://figshare.com/articles/dataset/The_regulatory_network_number_comes_from_the_ranking_of_the_hysteresis_score_18_/15077979

Availability: https://doi.org/10.1371/journal.pcbi.1009189.t001

Authors: Marcio Gameiro (10113841), Tomáš Gedeon (2940378), Shane Kepley (11205273), Konstantin Mischaikow (5131214)

Subject Terms: Cell Biology, Genetics, Biotechnology, Science Policy, Infectious Diseases, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, network models, node networks, exhibit hysteresis, network designs, Rational design, phenotype, equation models, construction, design constraints, bistable switches, robustness

Relation: https://figshare.com/articles/dataset/_Hysteresis_and_perturbed_hysteresis_scores_Results_for_comparisons_with_four_networks_/15077982

Availability: https://doi.org/10.1371/journal.pcbi.1009189.t002

Authors: Rocky Diegmiller (10113838), Lun Zhang (3763507), Marcio Gameiro (10113841), Justinn Barr (6454430), Jasmin Imran Alsous (10113844), Paul Schedl (115354), Stanislav Y. Shvartsman (4442422), Konstantin Mischaikow (5131214)

Subject Terms: Medicine, Cell Biology, Genetics, Biotechnology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, model oocyte selection, Mapping parameter spaces, nonlinear, parameter regions, approach, exploration, circuit

Relation: https://figshare.com/articles/figure/The_oocyte_selection_model_/13763764

Availability: https://doi.org/10.1371/journal.pcbi.1008711.g002

Authors: Rocky Diegmiller (10113838), Lun Zhang (3763507), Marcio Gameiro (10113841), Justinn Barr (6454430), Jasmin Imran Alsous (10113844), Paul Schedl (115354), Stanislav Y. Shvartsman (4442422), Konstantin Mischaikow (5131214)

Subject Terms: Medicine, Cell Biology, Genetics, Biotechnology, Developmental Biology, Infectious Diseases, Computational Biology, Environmental Sciences not elsewhere classified, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, model oocyte selection, Mapping parameter spaces, nonlinear, parameter regions, approach, exploration, circuit

Relation: https://figshare.com/articles/figure/Graph_adjacency_and_topology_of_parameter_space_/13763782

Availability: https://doi.org/10.1371/journal.pcbi.1008711.g006