Authors: Fadeev, Eduard, Hennenfeind, Jennifer H., Amano, Chie, Zhao, Zihao, Klun, Katja, Herndl, Gerhard J., Tinta, Tinkara

Contributors: Rappe, Michael S., EC | European Research Council, Javna Agencija za Raziskovalno Dejavnost RS, Austrian Science Fund

Superior Title: mSystems ; volume 9, issue 2 ; ISSN 2379-5077

Subject Terms: Computer Science Applications, Genetics, Molecular Biology, Modeling and Simulation, Ecology, Evolution, Behavior and Systematics, Biochemistry, Physiology, Microbiology

Availability: https://doi.org/10.1128/msystems.01264-23

Authors: Orel, Neža¹ (AUTHOR) neza.orel@nib.si, Fadeev, Eduard² (AUTHOR), Herndl, Gerhard J.^2,3 (AUTHOR), Turk, Valentina¹ (AUTHOR), Tinta, Tinkara¹ (AUTHOR) tinkara.tinta@nib.si

Superior Title: BMC Genomics. 2/6/2024, Vol. 25, p1-15. 15p.

Subject Terms: *HORIZONTAL gene transfer, *VIBRIO, *BACTERIAL genomes, *WHOLE genome sequencing, *GENOMICS, *AXENIC cultures

Authors: Fadeev, Eduard

Relation: https://github.com/edfadeev/DECOMB/tree/Preprint; https://dx.doi.org/10.5281/zenodo.8119923

Availability: https://doi.org/10.5281/zenodo.811992410.5281/zenodo.8119923
https://zenodo.org/record/8119924

Authors: Orel, Neža, Fadeev, Eduard, Herndl, Gerhard J., Turk, Valentina, Tinta, Tinkara

Subject Terms: Microbiology, FOS Biological sciences, Genetics

Relation: https://dx.doi.org/10.1038/s41559-019-0999-7; https://dx.doi.org/10.1098/rstb.2015.0364; https://dx.doi.org/10.1128/msystems.00032-16; https://dx.doi.org/10.1128/mbio.00444-16; https://dx.doi.org/10.1146/annurev-food-041715-033259; https://dx.doi.org/10.2807/1560-7917.es.2021.26.9.1900606; https://dx.doi.org/10.1371/journal.ppat.1003967; https://dx.doi.org/10.1128/mbio.01425-17; https://dx.doi.org/10.1073/pnas.0409900102; https://dx.doi.org/10.1038/ncomms12860; https://dx.doi.org/10.1007/s00018-015-2004-1; https://dx.doi.org/10.7717/peerj.675; https://dx.doi.org/10.1186/s12915-017-0366-6; https://dx.doi.org/10.1126/science.274.5295.2025; https://dx.doi.org/10.1111/j.1462-2920.2010.02209.x; https://dx.doi.org/10.1038/s41572-018-0005-8; https://dx.doi.org/10.1128/mmbr.68.3.403-431.2004; https://dx.doi.org/10.1128/9781555815714; https://dx.doi.org/10.1038/nature09530; https://dx.doi.org/10.1038/ismej.2011.107

Availability: https://doi.org/10.6084/m9.figshare.2515731310.1038/s41559-019-0999-710.1098/rstb.2015.036410.1128/msystems.00032-1610.1128/mbio.00444-1610.1146/annurev-food-041715-03325910.2807/1560-7917.es.2021.26.9.190060610.1371/journal.ppat.100396710.1128/mbio.01425-1710.1073/pnas.040990010210.1038/ncomms1286010.1007/s00018-015-2004-110.7717/peerj.67510.1186/s12915-017-0366-610.1126/science.274.5295.202510.1111/j.1462-2920.2010.02209.x10.1038/s41572-018-0005-810.1128/mmbr.68.3.403-431.200410.1128/978155581571410.1038/nature0953010.1038/ismej.2011.107
https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Recovering_high-quality_bacterial_genomes_from_cross-contaminated_cultures_a_case_study_of_marine_Vibrio_campbellii/25157313

Authors: Fadeev, Eduard^{Aff1, Aff2, Aff7, IDs4200302102776w_cor1}, Rogge, Andreas^{Aff1, Aff3}, Ramondenc, Simon, Nöthig, Eva-Maria, Wekerle, Claudia, Bienhold, Christina^{Aff1, Aff2}, Salter, Ian^{Aff1, Aff4}, Waite, Anya M.^{Aff1, Aff5}, Hehemann, Laura, Boetius, Antje^{Aff1, Aff2, Aff6}, Iversen, Morten H.^{Aff1, Aff6, IDs4200302102776w_cor11}

Superior Title: Communications Biology. 4(1)

Authors: Fadeev, Eduard, Carpaneto Bastos, Cécile, Hennenfeind, Jennifer H, Biller, Steven J, Sher, Daniel, Wietz, Matthias, Herndl, Gerhard J

Superior Title: Microlife

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10117737/; http://www.ncbi.nlm.nih.gov/pubmed/37223730; http://dx.doi.org/10.1093/femsml/uqac025

Availability: https://doi.org/10.1093/femsml/uqac025
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10117737/
http://www.ncbi.nlm.nih.gov/pubmed/37223730

Authors: Orel, Neža, Fadeev, Eduard, Klun, Katja, Ličer, Matjaž, Tinta, Tinkara, Turk, Valentina

Superior Title: Front Microbiol

Subject Terms: Microbiology

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8801744/; http://www.ncbi.nlm.nih.gov/pubmed/35111137; http://dx.doi.org/10.3389/fmicb.2021.765091

Availability: https://doi.org/10.3389/fmicb.2021.765091
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8801744/
http://www.ncbi.nlm.nih.gov/pubmed/35111137

Authors: Cardozo-Mino, Magda G., Fadeev, Eduard, Salman-Carvalho, Verena, Boetius, Antje

Superior Title: Microbiology Department Faculty Publication Series

Subject Terms: CATALYZED REPORTER DEPOSITION, IN-SITU HYBRIDIZATION, SEA-ICE LOSS, BACTERIAL COMMUNITIES, INTERANNUAL VARIABILITY, PLANKTONIC ARCHAEA, ORGANIC-MATTER, OCEAN, DEGRADATION, ENUMERATION, Microbiology

File Description: application/pdf

Relation: https://scholarworks.umass.edu/micro_faculty_pubs/346; https://scholarworks.umass.edu/context/micro_faculty_pubs/article/1345/viewcontent/fmicb_12_658803.pdf

Availability: https://doi.org/10.3389/fmicb.2021.658803
https://scholarworks.umass.edu/micro_faculty_pubs/346
https://scholarworks.umass.edu/context/micro_faculty_pubs/article/1345/viewcontent/fmicb_12_658803.pdf

Authors: Fadeev, Eduard, Cardozo-Mino, Magda G., Rapp, Josephine Z., Bienhold, Christina, Salter, Ian, Salman-Carvalho, Verena, Molari, Massimiliano, Tegetmeyer, Halina E., Buttigieg, Pier Luigi

Superior Title: Microbiology Department Faculty Publication Series

Subject Terms: Microbiology

File Description: application/pdf

Relation: https://scholarworks.umass.edu/micro_faculty_pubs/339; https://scholarworks.umass.edu/context/micro_faculty_pubs/article/1338/viewcontent/fmicb_12_637526.pdf

Availability: https://doi.org/10.3389/fmicb.2021.637526
https://scholarworks.umass.edu/micro_faculty_pubs/339
https://scholarworks.umass.edu/context/micro_faculty_pubs/article/1338/viewcontent/fmicb_12_637526.pdf

Authors: Marmen, Sophi, Fadeev, Eduard, Al Ashhab, Ashraf, Benet-Perelberg, Ayana, Naor, Alon, Patil, Hemant J., Cytryn, Eddie, Viner-Mozzini, Yehudit, Sukenik, Assaf, Lalzar, Maya, Sher, Daniel

Superior Title: Front Microbiol

Subject Terms: Microbiology

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8264503/; http://dx.doi.org/10.3389/fmicb.2021.679743

Availability: https://doi.org/10.3389/fmicb.2021.679743
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8264503/

Authors: Fadeev, Eduard, Wietz, Matthias, von Appen, Wilken‐Jon, Iversen, Morten H., Nöthig, Eva‐Maria, Engel, Anja, Grosse, Julia, Graeve, Martin, Boetius, Antje

File Description: text

Relation: https://oceanrep.geomar.de/id/eprint/52654/1/Limnology%20Oceanography%20-%202021%20-%20Fadeev%20-%20Submesoscale%20physicochemical%20dynamics%20directly%20shape%20bacterioplankton%20community.pdf; Fadeev, E. , Wietz, M. , von Appen, W., Iversen, M. H., Nöthig, E., Engel, A. , Grosse, J. , Graeve, M. and Boetius, A. (2021) Submesoscale physicochemical dynamics directly shape bacterioplankton community structure in space and time. Open Access Limnology and Oceanography, 66 (7). pp. 2901-2913. DOI 10.1002/lno.11799 .

Availability: https://doi.org/10.1002/lno.11799
https://oceanrep.geomar.de/id/eprint/52654/
https://oceanrep.geomar.de/id/eprint/52654/1/Limnology%20Oceanography%20-%202021%20-%20Fadeev%20-%20Submesoscale%20physicochemical%20dynamics%20directly%20shape%20bacterioplankton%20community.pdf

Authors: Fadeev, Eduard, Cardozo-Mino, Magda G, Rapp, Josephine Z, Bienhold, Christina, Salter, Ian, Salman-Carvalho, Verena, Molari, Massimiliano, Tegetmeyer, Halina, Buttigieg, Pier Luigi, Boetius, Antje

Relation: vignette : https://noah.nrw/titlepage/urn/urn:nbn:de:0070-pub-29530120/128; eIssn:1664-302X; MEDLINE:33664723; ISI:000623612400001; urn:nbn:de:0070-pub-29530120; https://nbn-resolving.org/urn:nbn:de:0070-pub-29530120; system:bielefeld_pub_2953012

Availability: https://doi.org/10.3389/fmicb.2021.637526
https://nbn-resolving.org/urn:nbn:de:0070-pub-29530120

Authors: Steiner, P.A. (Paul A.), Geijo, Javier, Fadeev, Eduard, Obiol, Áleix, Sintes, E. (Eva), Rattei, Thomas, Herndl, G.J. (Gerhard J.)

Subject Terms: coastal Mediterranean Sea, seasonal dynamics, eukaryotes, Adriatic Sea, prokaryoplankton, marine snow particles

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2020.584222/full; http://hdl.handle.net/10508/11837; Frontiers in Microbiology, 16. 2021: 1-16

Availability: https://doi.org/10.3389/fmicb.2020.584222
http://hdl.handle.net/10508/11837

Authors: Steiner, Paul A., Geijo, Javier, Fadeev, Eduard, Obiol, Aleix, Sintes, Eva, Rattei, Thomas, Herndl, Gerhard J.

Superior Title: Front Microbiol

Subject Terms: Microbiology

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7701263/; http://dx.doi.org/10.3389/fmicb.2020.584222

Availability: https://doi.org/10.3389/fmicb.2020.584222
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7701263/

Authors: Fadeev, Eduard, Bastos, Cécile Carpaneto, Hennenfeind, Jennifer H, Biller, Steven J, Sher, Daniel, Wietz, Matthias, Herndl, Gerhard J

Superior Title: EPIC3microLife, Oxford University Press (OUP), 4, pp. uqac025-uqac025, ISSN: 2633-6693

File Description: application/pdf

Relation: https://epic.awi.de/id/eprint/58341/1/Characterization%20of%20membrane%20vesicles%20in%20iAlteromonas%20macleodiii%20indicates%20potential%20roles%20in%20their%20copiotrophic%20lifestyle.pdf; Fadeev, E. , Bastos, C. C. , Hennenfeind, J. H. , Biller, S. J. , Sher, D. , Wietz, M. orcid:0000-0002-9786-3026 and Herndl, G. J. (2023) Characterization of membrane vesicles in Alteromonas macleodii indicates potential roles in their copiotrophic lifestyle , microLife, 4 , uqac025-uqac025 . doi:10.1093/femsml/uqac025 , hdl:10013/epic.ee300cbb-b1e4-434c-a462-cde64b9ade8a

Availability: https://doi.org/10.1093/femsml/uqac025
https://epic.awi.de/id/eprint/58341/
https://epic.awi.de/id/eprint/58341/1/Characterization%20of%20membrane%20vesicles%20in%20iAlteromonas%20macleodiii%20indicates%20potential%20roles%20in%20their%20copiotrophic%20lifestyle.pdf
https://hdl.handle.net/10013/epic.ee300cbb-b1e4-434c-a462-cde64b9ade8a

Authors: Barak, Noga, Fadeev, Eduard, Brekhman, Vera, Aharonovich, Dikla, Lotan, Tamar, Sher, Daniel

Superior Title: Microorganisms; Apr2023, Vol. 11 Issue 4, p955, 17p

Subject Terms: RIBOSOMAL RNA, BACTERIAL communities, HYPERVARIABLE regions, MICROBIAL communities

Authors: Fadeev, Eduard, Salter, Ian, Schourup-Kristensen, Vibe, Nöthig, Eva-Maria, Metfies, Katja, Engel, Anja, Piontek, Judith, Boetius, Antje, Bienhold, Christina

File Description: text

Relation: https://oceanrep.geomar.de/id/eprint/44717/1/fmars-05-00429.pdf; https://oceanrep.geomar.de/id/eprint/44717/2/Data_Sheet_1_Microbial%20Communities%20in%20the%20East%20and%20West%20Fram%20Strait%20During%20Sea%20Ice%20Melting%20Season.pdf; Fadeev, E., Salter, I., Schourup-Kristensen, V., Nöthig, E. M., Metfies, K., Engel, A. , Piontek, J., Boetius, A. and Bienhold, C. (2018) Microbial Communities in the East and West Fram Strait During Sea Ice Melting Season. Open Access Frontiers in Marine Science, 5 . Art.Nr. 429. DOI 10.3389/fmars.2018.00429 .

Availability: https://doi.org/10.3389/fmars.2018.00429
https://oceanrep.geomar.de/id/eprint/44717/
https://oceanrep.geomar.de/id/eprint/44717/1/fmars-05-00429.pdf
https://oceanrep.geomar.de/id/eprint/44717/2/Data_Sheet_1_Microbial%20Communities%20in%20the%20East%20and%20West%20Fram%20Strait%20During%20Sea%20Ice%20Melting%20Season.pdf

Authors: Buttigieg, Pier Luigi, Fadeev, Eduard, Bienhold, Christina, Hehemann, Laura, Offre, Pierre, Boetius, Antje

Contributors: European Union's Horizon, European Research Council

Superior Title: Current Opinion in Microbiology ; volume 43, page 169-185 ; ISSN 1369-5274

Subject Terms: Infectious Diseases, Microbiology (medical), Microbiology

Availability: https://doi.org/10.1016/j.mib.2018.01.015
https://api.elsevier.com/content/article/PII:S1369527417302035?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S1369527417302035?httpAccept=text/plain

Authors: Fadeev, Eduard, Hã¼bner, Sariel, Aharonovich, Dikla, Sher, Daniel, DE PASCALE, FABIO, VEZZI, ALESSANDRO

Contributors: Fadeev, Eduard, DE PASCALE, Fabio, Vezzi, Alessandro, Hã¼bner, Sariel, Aharonovich, Dikla, Sher, Daniel

Subject Terms: Alteromona, Genome assembly, Genomic island, Metal resistance, Plasmid, Microbiology, Microbiology (medical)

File Description: ELETTRONICO

Relation: info:eu-repo/semantics/altIdentifier/pmid/27014193; info:eu-repo/semantics/altIdentifier/wos/WOS:000371538700001; volume:7; issue:MAR; journal:FRONTIERS IN MICROBIOLOGY; http://hdl.handle.net/11577/3240495; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-84964350823; http://journal.frontiersin.org/article/10.3389/fmicb.2016.00248/full

Availability: https://doi.org/10.3389/fmicb.2016.00248
http://hdl.handle.net/11577/3240495

Authors: Salman-Carvalho, Verena, Fadeev, Eduard, Joye, Samantha B., Teske, Andreas

Contributors: National Science Foundation, Deutsche Forschungsgemeinschaft

Superior Title: Frontiers in Microbiology ; volume 7 ; ISSN 1664-302X

Subject Terms: Microbiology (medical), Microbiology

Availability: https://doi.org/10.3389/fmicb.2016.01173