Authors: Bærentsen, René L, Nielsen, Stine V, Skjerning, Ragnhild B, Lyngsø, Jeppe, Bisiak, Francesco, Pedersen, Jan Skov, Gerdes, Kenn, Sørensen, Michael A, Brodersen, Ditlev E
Superior Title: Bærentsen , R L , Nielsen , S V , Skjerning , R B , Lyngsø , J , Bisiak , F , Pedersen , J S , Gerdes , K , Sørensen , M A & Brodersen , D E 2023 , ' Structural basis for kinase inhibition in the tripartite E. coli HipBST toxin-antitoxin system ' , eLife , vol. 12 , RP90400 . https://doi.org/10.7554/eLife.90400
Subject Terms: Escherichia coli/genetics, Escherichia coli Proteins/metabolism, Toxin-Antitoxin Systems/genetics, Phosphorylation, Antitoxins/metabolism
Contributors: Namwoo Heo, Jihee Lee, Yeonkyung Kim, Donghan Lee, Seok-Jae Heo, Yoon Soo Park, Jae-Won Yun, Yong Chan Kim, Kim, Yong Chan
Subject Terms: Adult, Child, Preschool, Diarrhea / epidemiology, Disease Outbreaks, Enterohemorrhagic Escherichia coli* / genetics, Escherichia coli Infections* / diagnosis, Escherichia coli Infections* / epidemiology, Escherichia coli Infections* / microbiology, Escherichia coli O157* / genetics, Humans, Republic of Korea / epidemiology, Children, EHEC, Epidemiological Investigation, Food Poisoning, Gyeonggi-do, Korea, Outbreak, Transmission
File Description: application/pdf
Relation: JOURNAL OF KOREAN MEDICAL SCIENCE; J01517; OAK-2023-01424; OAK-2023-01425; https://ir.ymlib.yonsei.ac.kr/handle/22282913/195321; T202302940; JOURNAL OF KOREAN MEDICAL SCIENCE, Vol.38(15) : e117, 2023-04
Authors: Schäfer, Ann-Britt, Steenhuis, Maurice, Jim, Kin Ki, Neef, Jolanda, O'Keefe, Sarah, Whitehead, Roger C, Swanton, Eileithyia, Wang, Biwen, Halbedel, Sven, High, Stephen, van Dijl, Jan Maarten, Luirink, Joen, Wenzel, Michaela
Superior Title: Schäfer , A-B , Steenhuis , M , Jim , K K , Neef , J , O'Keefe , S , Whitehead , R C , Swanton , E , Wang , B , Halbedel , S , High , S , van Dijl , J M , Luirink , J & Wenzel , M 2023 , ' Dual Action of Eeyarestatin 24 on Sec-Dependent Protein Secretion and Bacterial DNA ' , ACS Infectious Diseases , vol. 9 , no. 2 , pp. 253-269 . https://doi.org/10.1021/acsinfecdis.2c00404
Subject Terms: Animals, Escherichia coli/genetics, DNA, Bacterial, Anti-Bacterial Agents/pharmacology, Zebrafish, Gram-Negative Bacteria/metabolism, Gram-Positive Bacteria, Protein Transport
File Description: application/pdf
Superior Title: Journal of Visualized Experiments (193
Subject Terms: Sciences bio-médicales et agricoles, Anti-Bacterial Agents -- pharmacology, Escherichia coli -- genetics, Bacteria, Cell Division, Single-Cell Analysis -- methods
File Description: 2 full-text file(s): application/pdf | application/pdf
Relation: uri/info:doi/10.3791/64550; uri/info:pmid/37036204; https://dipot.ulb.ac.be/dspace/bitstream/2013/363822/1/doi_347466.pdf; https://dipot.ulb.ac.be/dspace/bitstream/2013/363822/5/OmsJOVE2023.pdf; http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/363822
Availability:
http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/363822
https://dipot.ulb.ac.be/dspace/bitstream/2013/363822/5/OmsJOVE2023.pdf
Authors: Basapathi Raghavendra, Jyothi, Zorzano, Maria-Paz, Kumaresan, Deepak, Martin-Torres, Javier
Superior Title: Basapathi Raghavendra , J , Zorzano , M-P , Kumaresan , D & Martin-Torres , J 2023 , ' DNA sequencing at the picogram level to investigate life on Mars and Earth ' , Scientific Reports , vol. 13 , 15277 . https://doi.org/10.1038/s41598-023-42170-6
Subject Terms: Soil, Extraterrestrial Environment, Mars, Saccharomyces cerevisiae - genetics, Escherichia coli - genetics, Sequence Analysis, DNA, /dk/atira/pure/sustainabledevelopmentgoals/good_health_and_well_being, SDG 3 - Good Health and Well-being
File Description: application/pdf
Superior Title: Protein Expression and Purification, 215, 106411 (2024-03)
Subject Terms: Bispecific, Escherichia coli F17+, F17G, Nanobodies, Animals, Camelus, Fimbriae, Bacterial/chemistry, Bacterial/metabolism, Diarrhea/metabolism, Diarrhea/microbiology, Escherichia coli/genetics, Escherichia coli/chemistry, Escherichia coli Infections/metabolism, Escherichia coli Infections/microbiology, Diarrhea, Escherichia coli, Escherichia coli Infections, Bacterial, Biotechnology, Life sciences, Biochemistry, biophysics & molecular biology, Sciences du vivant, Biochimie, biophysique & biologie moléculaire
Relation: https://api.elsevier.com/content/article/PII:S1046592823001821?httpAccept=text/xml; urn:issn:1046-5928; urn:issn:1096-0279; https://orbi.uliege.be/handle/2268/311787; info:hdl:2268/311787; scopus-id:2-s2.0-85179053180; info:pmid:38056514
Authors: van der Linden, Ardjan J., Pieters, Pascal A., Bartelds, Mart W., Nathalia, Bryan L., Yin, Peng, Huck, Wilhelm T.S., Kim, Jongmin, de Greef, Tom F.A.
Superior Title: van der Linden , A J , Pieters , P A , Bartelds , M W , Nathalia , B L , Yin , P , Huck , W T S , Kim , J & de Greef , T F A 2022 , ' DNA Input Classification by a Riboregulator-Based Cell-Free Perceptron ' , ACS Synthetic Biology , vol. 11 , no. 4 , pp. 1510-1520 . https://doi.org/10.1021/acssynbio.1c00596
Subject Terms: DNA/genetics, Escherichia coli/genetics, Neural Networks, Computer, synthetic biology, perceptron, weighted sum operations (WSO), synthetic genetic networks, cell-free systems, genetic classifier
File Description: application/pdf
Contributors: Hyeon Jin Choi, Seok Hoon Jeong, Kyeong Seob Shin, Young Ah Kim, Young Ree Kim, Hyun Soo Kim, Jong Hee Shin, Jeong Hwan Shin, Young Uh, Songmee Bae, Eun-Jeong Yoon, Jung Sik Yoo, Jeong, Seok Hoon
Subject Terms: Anti-Bacterial Agents / therapeutic use, Anti-Infective Agents, Escherichia coli Infections* / microbiology, Humans, Risk Factors, Sepsis* / drug therapy, Urinary Tract Infections* / complications, Urinary Tract Infections* / drug therapy, Urinary Tract Infections* / epidemiology, Uropathogenic Escherichia coli* / genetics, beta-Lactamases / genetics, CTX-M ESBL, Escherichia coli, ST131 H41 sublineage, combination therapy, urinary tract infections
File Description: application/pdf
Relation: MICROBIOLOGY SPECTRUM; J04082; OAK-2022-06813; https://ir.ymlib.yonsei.ac.kr/handle/22282913/191730; T202204181; MICROBIOLOGY SPECTRUM, Vol.10(4) : e0166022, 2022-07
Contributors: Soo Lim Kim, Jun Ho Choi, Myung-Hee Yi, Seogwon Lee, Myungjun Kim, Singeun Oh, In-Yong Lee, Bo-Young Jeon, Tai-Soon Yong, Ju Yeong Kim, Kim, Ju Young
Subject Terms: Animals, Bacteria / genetics, Escherichia coli / genetics, Helminths, Male, Mice, Murinae / parasitology, Parasites* / genetics, RNA, Ribosomal, 16S / genetics, 16S rDNA, 18S rDNA, Apodemus agrarius, Microbiome, Parasite
File Description: application/pdf
Relation: PARASITES & VECTORS; J03638; OAK-2022-09920; OAK-2022-09921; https://ir.ymlib.yonsei.ac.kr/handle/22282913/193079; T202300289; PARASITES & VECTORS, Vol.15(1) : 486, 2022-12
Contributors: Eun-Jeong Yoon, You Jeong Choi, Dokyun Kim, Dongju Won, Jong Rak Choi, Seok Hoon Jeong, Kim, Dokyun
Subject Terms: Anti-Bacterial Agents* / pharmacology, Chromosomes, Bacterial / genetics, Drug Resistance, Bacterial, Escherichia coli Infections / microbiology, Escherichia coli* / drug effects, Escherichia coli* / genetics, Escherichia coli* / metabolism, Humans, Plasmids / genetics, beta-Lactamases / genetics, CTX-M ESBL, Escherichia coli, gene amplification, resistance spectrum, transcription level
File Description: application/pdf
Relation: MICROBIOLOGY SPECTRUM; J04082; OAK-2022-03160; https://ir.ymlib.yonsei.ac.kr/handle/22282913/189499; T202202771; MICROBIOLOGY SPECTRUM, Vol.10(3) : e0031922, 2022-06
Superior Title: Sabzevari , M , Szedmak , S , Penttilä , M , Jouhten , P & Rousu , J 2022 , ' Strain design optimization using reinforcement learning ' , PLoS Computational Biology , vol. 18 , no. 6 , e1010177 . https://doi.org/10.1371/journal.pcbi.1010177
Subject Terms: Escherichia coli/genetics, Metabolic Engineering/methods, Metabolic Networks and Pathways, Saccharomyces cerevisiae/genetics, Synthetic Biology
Authors: Davies, Matthew, Galazzo, Gianluca, van Hattem, Jarne M, Arcilla, Maris S, Melles, Damian C, de Jong, Menno D, Schultsz, Constance, Wolffs, Petra, McNally, Alan, Schaik, Willem van, Penders, John
Superior Title: Davies , M , Galazzo , G , van Hattem , J M , Arcilla , M S , Melles , D C , de Jong , M D , Schultsz , C , Wolffs , P , McNally , A , Schaik , W V & Penders , J 2022 , ' Enterobacteriaceae and Bacteroidaceae provide resistance to travel-associated intestinal colonization by multi-drug resistant Escherichia coli ' , Gut Microbes , vol. 14 , no. 1 , 2060676 . https://doi.org/10.1080/19490976.2022.2060676
Subject Terms: Anti-Bacterial Agents/pharmacology, Bacteria, Bacteroidaceae, Diarrhea/drug therapy, Enterobacteriaceae Infections/microbiology, Enterobacteriaceae/genetics, Escherichia coli/genetics, Gastrointestinal Microbiome, Humans, Travel, beta-Lactamases/genetics, ANTIMICROBIALS, MICROBIOME, Extended-spectrum beta-lactamase, antimicrobial resistance, ANNOTATION, NARROW-SPECTRUM, CARRIAGE, SEARCH, RISK, MODEL, metagenome, EPIDEMIOLOGY
Authors: Wong, Jun Jie, Ho, Foo Kiong, Choo, Pei Yi, Chong, Kelvin K L, Ho, Chee Meng Benjamin, Neelakandan, Ramesh, Keogh, Damien, Barkham, Timothy, Chen, John, Liu, Chuan Fa, Kline, Kimberly Ann
Superior Title: ISSN: 1553-7366 ; PLOS pathogens, vol. 18, no. 9 (2022) e1010766.
Subject Terms: info:eu-repo/classification/ddc/616, Animals, Anti-Bacterial Agents / metabolism, Carbon / metabolism, Escherichia coli / genetics, Escherichia coli / metabolism, Escherichia coli Infections / microbiology, Escherichia coli Proteins / metabolism, Humans, Membrane Proteins / metabolism, Mice, Mutagens / metabolism, N-Methylaspartate / metabolism, Peptides, Phosphotransferases / genetics, Polyketides / metabolism, Staphylococcus / metabolism, Staphylococcus aureus / genetics, Staphylococcus aureus / metabolism, Transcription Factors / metabolism, Wound Infection / microbiology
Relation: info:eu-repo/semantics/altIdentifier/pmid/36067266; https://archive-ouverte.unige.ch/unige:164396; unige:164396
Availability:
https://doi.org/10.1371/journal.ppat.1010766
https://archive-ouverte.unige.ch/unige:164396
Authors: Maso, Lorenzo, Vascon, Filippo, Chinellato, Monica, Goormaghtigh, Frederic, Bellio, Pierangelo, Campagnaro, Enrica, Van Melderen, Laurence, Ruzzene, Maria, Pardon, Els, Angelini, Alessandro, Celenza, Giuseppe, Steyaert, Jan, Tondi, Donatella, Cendron, Laura
Superior Title: Structure, 30 (11
Subject Terms: Sciences bio-médicales et agricoles, SOS Response, Genetics, Rec A Recombinases -- genetics -- metabolism, Single-Domain Antibodies -- genetics -- metabolism, Bacterial Proteins -- genetics -- metabolism, Serine Endopeptidases -- genetics -- metabolism, Escherichia coli -- genetics -- metabolism, Anti-Bacterial Agents -- pharmacology, LexA repressor, RecA recombinase, X-ray crystallography, antimicrobial resistance, autoproteolysis, fluorescence polarization, inhibition, nanobodies, surface plasmon resonance
File Description: 2 full-text file(s): application/pdf | application/pdf
Relation: uri/info:doi/10.1016/j.str.2022.09.004; uri/info:pii/S0969-2126(22)00357-4; uri/info:pmid/36240773; https://dipot.ulb.ac.be/dspace/bitstream/2013/363823/5/MasoStructure2022.pdf; https://dipot.ulb.ac.be/dspace/bitstream/2013/363823/1/elsevier_347467.pdf; http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/363823
Availability:
http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/363823
https://dipot.ulb.ac.be/dspace/bitstream/2013/363823/5/MasoStructure2022.pdf
https://dipot.ulb.ac.be/dspace/bitstream/2013/363823/1/elsevier_347467.pdf
Superior Title: Dandare , S U , Håkansson , M , Svensson , L A , Timson , D J & Allen , C C R 2022 , ' Expression, purification and crystallization of a novel metagenome-derived salicylaldehyde dehydrogenase from Alpine soil ' , Acta crystallographica. Section F, Structural biology communications , vol. 78 , no. 4 , pp. 161-169 . https://doi.org/10.1107/S2053230X22002345
Subject Terms: Crystallization, salicylaldehyde dehydrogenase, metagenome, Escherichia coli - genetics, Alpine soil, Soil, crystallography, Ligands, purification, alphaproteobacteria, Aldehyde Oxidoreductases, X-Ray
File Description: application/pdf
Authors: Allen, Jawara, Rosendahl Huber, Axel, Pleguezuelos-Manzano, Cayetano, Puschhof, Jens, Wu, Shaoguang, Wu, Xinqun, Boot, Charelle, Saftien, Aurelia, O'Hagan, Heather M, Wang, Hao, van Boxtel, Ruben, Clevers, Hans, Sears, Cynthia L
Superior Title: Allen , J , Rosendahl Huber , A , Pleguezuelos-Manzano , C , Puschhof , J , Wu , S , Wu , X , Boot , C , Saftien , A , O'Hagan , H M , Wang , H , van Boxtel , R , Clevers , H & Sears , C L 2022 , ' Colon Tumors in Enterotoxigenic Bacteroides fragilis (ETBF)-Colonized Mice Do Not Display a Unique Mutational Signature but Instead Possess Host-Dependent Alterations in the APC Gene ' , Microbiology spectrum , vol. 10 , no. 3 , pp. e0105522 . https://doi.org/10.1128/spectrum.01055-22
Subject Terms: Adenomatous Polyposis Coli/genetics, Animals, Bacterial Infections/pathology, Bacteroides fragilis/genetics, Colon/microbiology, Colonic Neoplasms/genetics, Colorectal Neoplasms/microbiology, Colorectal Neoplasms, Hereditary Nonpolyposis/genetics, Disease Models, Animal, Escherichia coli/genetics, Genes, APC, Mice, Mutation
Superior Title: Biomolecules 12(2), 324 (2022). doi:10.3390/biom12020324
Subject Terms: info:eu-repo/classification/ddc/570, Animals, Escherichia coli: genetics, Escherichia coli: metabolism, Recombinant Proteins, Reproducibility of Results, Synucleinopathies, alpha-Synuclein: genetics, alpha-Synuclein: metabolism, Parkinson’s disease, aggregation, alpha-synuclein, amyloid
Subject Geographic: DE
Relation: info:eu-repo/semantics/altIdentifier/issn/2218-273X; info:eu-repo/semantics/altIdentifier/pmid/pmid:35204823; https://pub.dzne.de/record/163292; https://pub.dzne.de/search?p=id:%22DZNE-2022-00072%22
Availability:
https://doi.org/10.3390/biom12020324
https://pub.dzne.de/record/163292
https://pub.dzne.de/search?p=id:%22DZNE-2022-00072%22
Authors: Hernández-García, M, García-Castillo, M, Bou, G, Cercenado, E, Delgado-Valverde, M, Oliver, A, Pitart, C, Rodríguez-Lozano, J, Tormo, N, Melo-Cristino, J, Pinto, MF, Gonçalves, E, Alves, V, Vieira, AR, Ramalheira, E, Sancho, L, Diogo, J, Ferreira, R, Cruz, H, Chaves, C, Duarte, J, Pássaro, L, Díaz-Regañón, J, Cantón, R
Subject Terms: Anti-Bacterial Agents / pharmacology, Drug Combinations, Escherichia coli* / genetics, Imipenem / pharmacology, Intensive Care Units, Klebsiella pneumoniae / genetics, Microbial Sensitivity Tests, Tazobactam / pharmacology, beta-Lactamase Inhibitors* / pharmacology, beta-Lactamases / genetics, Portugal, Spain, HDE PAT CLIN
Relation: Microbiol Spectr . 2022 Oct 26;10(5):e0292722.; http://hdl.handle.net/10400.17/4491
Superior Title: Dandapani , H , Kankaanpää , P , Jones , P R & Kallio , P 2022 , ' A Plasmid-Based Fluorescence Reporter System for Monitoring Oxidative Damage in E. coli ' , Sensors , vol. 22 , no. 17 , 6334 . https://doi.org/10.3390/s22176334
Subject Terms: Escherichia coli/genetics, Fluorescence, Hydrogen Peroxide/metabolism, Oxidative Stress/genetics, Oxygen/metabolism, Plasmids/genetics, Reactive Oxygen Species/chemistry
File Description: application/pdf