Search Results - Chihaya Yamada

1

Academic Journal

Identification and characterization of endo-α-, exo-α-, and exo-β-d-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria

Superior Title: Nature Communications, Vol 14, Iss 1, Pp 1-16 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/1607527fcc1847c28b2a04b62fd10e51

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2

Academic Journal

Author Correction: Identification and characterization of endo-α- exo-α-, and exo-β-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria

Superior Title: Nature Communications, Vol 14, Iss 1, Pp 1-1 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/69953b1815b54d6b97c4b5c6481a6c99

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3

Academic Journal

Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathways

Authors: Michael Jakob Pichler, Chihaya Yamada, Bashar Shuoker, Camila Alvarez-Silva, Aina Gotoh, Maria Louise Leth, Erwin Schoof, Toshihiko Katoh, Mikiyasu Sakanaka, Takane Katayama, Chunsheng Jin, Niclas G. Karlsson, Manimozhiyan Arumugam, Shinya Fushinobu, Maher Abou Hachem

Superior Title: Nature Communications, Vol 11, Iss 1, Pp 1-15 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/93e13acc192c463a8e81c96141510b43

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4

Academic Journal

Crystallographic and cryogenic electron microscopic structures and enzymatic characterization of sulfur oxygenase reductase from Sulfurisphaera tokodaii

Authors: Yuta Sato, Takashi Yabuki, Naruhiko Adachi, Toshio Moriya, Takatoshi Arakawa, Masato Kawasaki, Chihaya Yamada, Toshiya Senda, Shinya Fushinobu, Takayoshi Wakagi

Superior Title: Journal of Structural Biology: X, Vol 4, Iss , Pp 100030- (2020)

Subject Terms: X-ray crystallography, Cryogenic electron microscopy, Sulfur metabolism, Archaea, Nonheme mononuclear iron center, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S259015242030012X; https://doaj.org/toc/2590-1524

Access URL: https://doaj.org/article/cf82a56ffee14159a4e70e0e32184580

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5

Academic Journal

Crystal structure of β-L-arabinobiosidase belonging to glycoside hydrolase family 121.

Authors: Keita Saito, Alexander Holm Viborg, Shiho Sakamoto, Takatoshi Arakawa, Chihaya Yamada, Kiyotaka Fujita, Shinya Fushinobu

Superior Title: PLoS ONE, Vol 15, Iss 6, p e0231513 (2020)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/98330a7bcfea45a797d94b16ec38a0b8

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6

Academic Journal

Crystal structures of glycoside hydrolase family 136 lacto-N-biosidases from monkey gut- and human adult gut bacteria.

Authors: Chihaya Yamada^1,2 achihaya@g.ecc.u-tokyo.ac.jp, Takane Katayama³, Shinya Fushinobu^1,2 asfushi@mail.ecc.u-tokyo.ac.jp

Superior Title: Bioscience, Biotechnology & Biochemistry. Apr2022, Vol. 86 Issue 4, p464-475. 12p.

Subject Terms: *CRYSTAL structure, *BIFIDOBACTERIUM longum, *MONKEYS, *CELL suspensions, *BACTERIA, *GLYCOSIDASES

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7

Academic Journal

Protocatechuate hydroxylase is a novel group A flavoprotein monooxygenase with a unique substrate recognition mechanism.

Authors: Nozomi Katsuki¹, Riku Fukushima², Yuki Doi¹, Shunsuke Masuo¹, Takatoshi Arakawa³, Chihaya Yamada⁴, Shinya Fushinobu^2,5 asfushi@mail.ecc.u-tokyo.ac.jp, Naoki Takaya¹ takaya.naoki.ge@u.tsukuba.ac.jp

Superior Title: Journal of Biological Chemistry. Jan2024, Vol. 300 Issue 1, p1-13. 13p.

Subject Terms: *MONOOXYGENASES, *AMINO acid residues, *FLAVOPROTEINS, *PSEUDOMONAS aeruginosa, *ISOENZYMES

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8

Academic Journal

Identification, functional characterization, and crystal structure determination of bacterial levoglucosan dehydrogenase.

Authors: Masayuki Sugiura¹, Moe Nakahara¹, Chihaya Yamada^1,2, Takatoshi Arakawa^1,2, Motomitsu Kitaoka³, Shinya Fushinobu^1,2 asfushi@mail.ecc.u-tokyo.ac.jp

Superior Title: Journal of Biological Chemistry. 11/9/2018, Vol. 293 Issue 45, p17375-17386. 12p.

Subject Terms: *ORGANIC compounds, *DEHYDROGENASES, *CRYSTAL structure, *PYROLYSIS, *GLUCOSE

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9

Academic Journal

Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family.

Authors: Toma Kashima¹, Kouki Okumura², Akihiro Ishiwata³, Machika Kaieda², Tohru Terada¹, Takatoshi Arakawa^1,4, Chihaya Yamada^1,4, Kentaro Shimizu¹, Katsunori Tanaka^3,5, Motomitsu Kitaoka⁶, Yukishige Ito^3,7, Kiyotaka Fujita² k4022897@kadai.jp, Shinya Fushinobu^1,4 asfushi@mail.ecc.u-tokyo.ac.jp

Superior Title: Journal of Biological Chemistry. Nov2021, Vol. 297 Issue 5, p1-17. 17p.

Subject Terms: *BIOPOLYMERS, *FRUCTOSE, *MOLECULAR dynamics, *GLYCOSIDASES, *GLYCOSIDES, *CONDENSATION reactions, *EQUILIBRIUM reactions, *FRUCTOOLIGOSACCHARIDES

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10

Academic Journal

Structural basis for the specific cleavage of core-fucosylated N-glycans by endo-β-N-acetylglucosaminidase from the fungus Cordyceps militaris.

Authors: Haruka Seki¹, Yibo Huang², Takatoshi Arakawa^1,3, Chihaya Yamada^1,3, Takashi Kinoshita⁴, Shogo Iwamoto⁴, Yujiro Higuchi², Kaoru Takegawa², Shinya Fushinobu¹ asfushi@mail.ecc.u-tokyo.ac.jp

Superior Title: Journal of Biological Chemistry. 11/8/2019, Vol. 294 Issue 45, p17143-17154. 12p.

Subject Terms: *GLYCANS, *CORDYCEPS, *GLYCOPROTEIN synthesis, *PROTEIN engineering, *FUCOSE, *FUNGI

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