Authors: Ponce-de-Leon, Miguel, Montagud, Arnau, Noël, Vincent^{Aff2, Aff3, Aff4}, Meert, Annika, Pradas, Gerard, Barillot, Emmanuel^{Aff2, Aff3, Aff4}, Calzone, Laurence^{Aff2, Aff3, Aff4}, Valencia, Alfonso^{Aff1, Aff5, IDs41540023003144_cor8}

Superior Title: npj Systems Biology and Applications. 9(1)

Authors: Niarakis, Anna, Ostaszewski, Marek, Mazein, Alexander, Kuperstein, Inna, Kutmon, Martina, Gillespie, Marc, E, Funahashi, Akira, Acencio, Marcio, Luis, Hemedan, Ahmed, Aichem, Michael, Klein, Karsten, Czauderna, Tobias, Burtscher, Felicia, Yamada, Takahiro, G, Hiki, Yusuke, Hiroi, Noriko, F, Hu, Finterly, Pham, Nhung, Ehrhart, Friederike, Willighagen, Egon, L, Valdeolivas, Alberto, Dugourd, Aurelien, Messina, Francesco, Esteban-Medina, Marina, Peña-Chilet, Maria, Rian, Kinza, Soliman, Sylvain, Aghamiri, Sara, Sadat, Lal Puniya, Bhanwar, Naldi, Aurélien, Singh, Vidisha, Bermudez, Viviam, Tsirvouli, Eirini, Montagud, Arnau, Noël, Vincent, Ponce-De-Leon, Miguel, Maier, Dieter, Bauch, Angela, Gyori, Benjamin, M, Bachman, John, A, Luna, Augustin, Piñero, Janet, Furlong, Laura, I, Balaur, Irina, Rougny, Adrien, Jarosz, Yohan, Overall, Rupert, W, Phair, Robert, Perfetto, Livia, Matthews, Lisa, Arokia, Devasahayam, Rex, Balaya, Orlic-Milacic, Marija, Luis, Cristobal, de Meulder, Bertrand, Ravel, Jean, Marie, Jassal, Bijay, Satagopam, Venkata, Wu, Guanming, Golebiewski, Martin, Gawron, Piotr, Calzone, Laurence, Beckmann, Jacques, S, Evelo, Chris, T, d'Eustachio, Peter, Schreiber, Falk, Saez-Rodriguez, Julio, Dopazo, Joaquin, Kuiper, Martin, Valencia, Alfonso, Wolkenhauer, Olaf, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard, Naqa, Issam, El, Casarin, Stefano, Scotti, Marcus, Me, Gillespie, Ml, Acencio, Burtscher, Czauderna, T, Tg, Yamada, Nf, Hiroi, El, Willighagen, Ss, Aghamiri, Bl, Puniya, Mf, Bermudez, V, Bm, Gyori, Ja, Bachman, del Rocı, Virgen

Contributors: Laboratoire de recherche européen pour la polyarthrite rhumatoïde (GenHotel), Université d'Évry-Val-d'Essonne (UEVE)-Université Paris-Saclay, Computational systems biology and optimization (Lifeware), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), University of Luxembourg Luxembourg, Cancer et génome: Bioinformatique, biostatistiques et épidémiologie d'un système complexe, Mines Paris - PSL (École nationale supérieure des mines de Paris), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Institut Curie Paris -Institut National de la Santé et de la Recherche Médicale (INSERM), Université Paris Sciences et Lettres (PSL), Maastricht Centre for Systems Biology Maastricht (MaCSBio), Maastricht University Maastricht, Ontario Institute for Cancer Research Canada (OICR), Ontario Institute for Cancer Research, Keio University Tokyo, Luxembourg Centre For Systems Biomedicine (LCSB), University of Konstanz, Universität Konstanz, Hochschule Mittweida - University of Applied Sciences, Heidelberg University Hospital Heidelberg, Centre Hospitalier Universitaire Vaudois = Lausanne University Hospital Lausanne (CHUV), Hospital Universitario Virgen del Rocío Sevilla, Biomedicine Institute of Sevilla Seville, Spain, University of Nebraska–Lincoln, University of Nebraska System, Norwegian University of Science and Technology Trondheim (NTNU), Norwegian University of Science and Technology (NTNU), Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC-CNS), SLAC National Accelerator Laboratory (SLAC), Stanford University, Biomax Informatics Planegg, Harvard Medical School Boston (HMS), Universitat Pompeu Fabra Barcelona (UPF), National Institute of Advanced Industrial Science and Technology (AIST), Humboldt-Universität zu Berlin = Humboldt University of Berlin = Université Humboldt de Berlin (HU Berlin), Integrative Bioinformatics Inc Mountain View, Università degli Studi di Roma "La Sapienza" = Sapienza University Rome (UNIROMA), New York University Langone Medical Center (NYU Langone Medical Center), NYU System (NYU), Yenepoya University, Institut National de la Santé et de la Recherche Médicale (INSERM), European Institute for Systems Biology and Medicine (EISBM), Goethe-Universität Frankfurt am Main, Oregon State University (OSU), Heidelberg Institute for Theoretical Studies (HITS ), Université de Lausanne = University of Lausanne (UNIL), Bioinformatics and Systems Biology Research Group (BigCat), School of Nutrition and Translational Research in Metabolism Maastricht (NUTRIM), Maastricht University Maastricht -Maastricht University Maastricht, Monash University Clayton, Universität Heidelberg Heidelberg = Heidelberg University, CIBER de Enfermedades Raras (CIBERER), University of Rostock, Technische Universität Munchen - Technical University Munich - Université Technique de Munich (TUM), The Systems Biology Institute Tokyo (SBI), Universität Bonn = University of Bonn, European Project: 101046203,BY-COVID

Superior Title: ISSN: 1664-3224.

Subject Terms: [SDV]Life Sciences [q-bio], [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Relation: info:eu-repo/grantAgreement//101046203/EU/European Commission: BY-COVID - Beyond COVID (101046203)/BY-COVID; hal-04454379; https://hal.science/hal-04454379; https://hal.science/hal-04454379/document; https://hal.science/hal-04454379/file/pdf.pdf

Availability: https://doi.org/10.3389/fimmu.2023.1282859
https://hal.science/hal-04454379
https://hal.science/hal-04454379/document
https://hal.science/hal-04454379/file/pdf.pdf

Authors: Tsirvouli, Eirini, Noël, Vincent, Flobak, Åsmund, Calzone, Laurence, Kuiper, Martin

Superior Title: In iScience 16 February 2024 27(2)

Authors: Najm, Matthieu^{Aff1, Aff2, Aff3}, Cornet, Matthieu^{Aff1, Aff2, Aff3}, Albergante, Luca^{Aff1, Aff2, Aff3}, Zinovyev, Andrei^{Aff1, Aff2, Aff3}, Sermet-Gaudelus, Isabelle^{Aff4, Aff5, Aff6}, Stoven, Véronique^{Aff1, Aff2, Aff3}, Calzone, Laurence^{Aff1, Aff2, Aff3}, Martignetti, Loredana^{Aff1, Aff2, Aff3, IDs4154002400331x_cor8}

Superior Title: npj Systems Biology and Applications. 10(1)

Authors: Niarakis, Anna, Ostaszewski, Marek, Mazein, Alexander, Kuperstein, Inna, Kutmon, Martina, Gillespie, Marc E., Funahashi, Akira, Acencio, Marcio Luis, Hemedan, Ahmed, Aichem, Michael, Klein, Karsten, Czauderna, Tobias, Burtscher, Felicia, Yamada, Takahiro G., Hiki, Yusuke, Hiroi, Noriko F., Hu, Finterly, Pham, Nhung, Ehrhart, Friederike, Willighagen, Egon L., Valdeolivas, Alberto, Dugourd, Aurelien, Messina, Francesco, Esteban-Medina, Marina, Peña-Chilet, María, Rian, Kinza, Soliman, Sylvain, Aghamiri, Sara Sadat, Lal Puniya, Bhanwar, Naldi, Aurelien, Helikar, Tomas, Singh, Vidisha, Fariñas Fernández, Marco, Bermudez, Viviam, Tsirvouli, Eirini, Montagud, Arnau, Noël, Vincent, Ponce de León, Miguel, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M., Bachman, John A., Luna, Augustin, Piñero, Janet, Furlong, Laura I., Balaur, Irina BalaurIrina, Rougny, Adrien, Jarosz, Yohan, Overall, Rupert W., Phair, Robert, Perfetto, Livia, Matthews, Lisa, Balaya Rex, Devasahayam Arokia, Orlic-Milacic, Marija, Monraz Gómez, Luis Cristóbal, De Meulder, Bertrand, Ravel, Jean Marie, Jassal, Bijay, Satagopam, Venkata, Wu, Guanming, Golebiewski, Martin, Gawron, Piotr, Calzone, Laurence, Beckmann, Jacques S., Evelo, Chris T., D’Eustachio, Peter, Schreiber, Falk, Sáez-Rodríguez, Julio, Dopazo, Joaquín, Kuiper, Martin, Valencia, Alfonso, Wolkenhauer, Olaf, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard, COVID- Disease Map Community the COVID-19 Disease Map Community

Contributors: Sanofi, Instituto de Salud Carlos III, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), German Research Foundation, Ministero della Salute, European Commission, Generalitat de Catalunya, National Institutes of Health (US), Klaus Tschira Foundation, National Library of Medicine (US)

Subject Terms: SARS-CoV-2, Systems biology, Disease maps, Mechanistic models, Dynamic models, Systems medicine, Large-scale community effort

File Description: application/pdf

Relation: #PLACEHOLDER_PARENT_METADATA_VALUE#; info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-117979RB-I00/ES/MEDICINA INTERCEPTIVA, DESCUBRIMIENTO DE DIANAS Y REUTILIZACION DE FARMACOS MEDIANTE MODELOS MECANISTICOS Y APRENDIZAJE SUPERVISADO/; info:eu-repo/grantAgreement/EC/H2020/101046203; info:eu-repo/grantAgreement/EC/H2020/777365; info:eu-repo/grantAgreement/EC/H2020/964537; info:eu-repo/grantAgreement/EC/H2020/825070; info:eu-repo/grantAgreement/EC/H2020/951773; info:eu-repo/grantAgreement/EC/H2020/825843; Publisher's version; https://doi.org/10.3389/fimmu.2023.1282859; Sí; Frontiers in Immunology 14: 1282859 (2023); http://hdl.handle.net/10261/353584

Availability: https://doi.org/10.3389/fimmu.2023.1282859
http://hdl.handle.net/10261/353584

Authors: Tsirvouli, Eirini, Noël, Vincent, Flobak, Åsmund, Calzone, Laurence, Kuiper, Martin

Relation: https://dx.doi.org/10.1101/2023.09.03.556147; https://dx.doi.org/10.5281/zenodo.10351225

Availability: https://doi.org/10.5281/zenodo.1035122410.1101/2023.09.03.55614710.5281/zenodo.10351225

Authors: Calzone, Laurence, Noël, Vincent, Barillot, Emmanuel, Kroemer, Guido, Stoll, Gautier

Superior Title: Comput Struct Biotechnol J

Subject Terms: Corrigendum

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10242621/; http://www.ncbi.nlm.nih.gov/pubmed/37287810; http://dx.doi.org/10.1016/j.csbj.2023.05.021

Availability: https://doi.org/10.1016/j.csbj.2023.05.021
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10242621/
http://www.ncbi.nlm.nih.gov/pubmed/37287810

Authors: Ruscone, Marco, Montagud, Arnau, Chavrier, Philippe, Destaing, Olivier, Bonnet, Isabelle, Zinovyev, Andrei, Barillot, Emmanuel, Noël, Vincent, Calzone, Laurence

Superior Title: Bioinformatics

Subject Terms: Original Paper

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10293590/; http://www.ncbi.nlm.nih.gov/pubmed/37289551; http://dx.doi.org/10.1093/bioinformatics/btad374

Availability: https://doi.org/10.1093/bioinformatics/btad374
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10293590/
http://www.ncbi.nlm.nih.gov/pubmed/37289551

Authors: Calzone, Laurence, Noël, Vincent, Barillot, Emmanuel, Kroemer, Guido, Stoll, Gautier

Superior Title: In Computational and Structural Biotechnology Journal 2022 20:5661-5671

Authors: BÉAL, Jonas, REMY, Élisabeth, CALZONE, Laurence

Superior Title: Approches symboliques de la modélisation et de l’analyse des systèmes biologiques

Availability: https://doi.org/10.51926/iste.9029.ch4

Authors: Magaña López, Gustavo, Calzone, Laurence, Zinovyev, Andrei, Paulevé, Loïc

Contributors: Laboratoire Bordelais de Recherche en Informatique (LaBRI), Université de Bordeaux (UB)-École Nationale Supérieure d'Électronique, Informatique et Radiocommunications de Bordeaux (ENSEIRB)-Centre National de la Recherche Scientifique (CNRS), Cancer et génome: Bioinformatique, biostatistiques et épidémiologie d'un système complexe, Mines Paris - PSL (École nationale supérieure des mines de Paris), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Institut Curie Paris -Institut National de la Santé et de la Recherche Médicale (INSERM), Evotec Toulouse, ANR-20-CE45-0001,BNeDiction,Ensembles de Réseaux Booléens Prédictifs(2020), ANR-19-P3IA-0001,PRAIRIE,PaRis Artificial Intelligence Research InstitutE(2019), ANR-22-PESN-0002,AI4scMED,MultiScale AI for SingleCell-Based Precision Medicine(2022)

Superior Title: https://hal.science/hal-04294917 ; 2023.

Subject Terms: scRNA-Seq, Boolean networks, synthetic data, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [MATH.MATH-DS]Mathematics [math]/Dynamical Systems [math.DS], [STAT.ML]Statistics [stat]/Machine Learning [stat.ML]

Relation: hal-04294917; https://hal.science/hal-04294917; https://hal.science/hal-04294917/document; https://hal.science/hal-04294917/file/2023.10.23.563518v1.full.pdf; BIORXIV: 2023.10.23.563518

Availability: https://doi.org/10.1101/2023.10.23.563518
https://hal.science/hal-04294917
https://hal.science/hal-04294917/document
https://hal.science/hal-04294917/file/2023.10.23.563518v1.full.pdf

Authors: Chevalier, Stéphanie^Aff11, Noël, Vincent^Aff12, Calzone, Laurence^Aff12, Zinovyev, Andrei^{Aff12, Aff13}, Paulevé, Loïc^Aff14

Contributors: Goos, Gerhard, Founding Editor^Aff1, Hartmanis, Juris, Founding Editor^Aff2, Bertino, Elisa, Editorial Board Member^Aff3, Gao, Wen, Editorial Board Member^Aff4, Steffen, Bernhard, Editorial Board Member^Aff5, Woeginger, Gerhard, Editorial Board Member^Aff6, Yung, Moti, Editorial Board Member^Aff7, Abate, Alessandro, editor^Aff8, Petrov, Tatjana, editor^Aff9, Wolf, Verena, editor^Aff10

Superior Title: Computational Methods in Systems Biology : 18th International Conference, CMSB 2020, Konstanz, Germany, September 23–25, 2020, Proceedings. 12314:193-209

Authors: Shaikh, Bilal, Smith, Lucian P., Vasilescu, Dan, Marupilla, Gnaneswara, Wilson, Michael, Agmon, Eran, Agnew, Henry, Andrews, Steven S., Anwar, Azraf, Beber, Moritz E., Bergmann, Frank T., Brooks, David, Brusch, Lutz, Calzone, Laurence, Choi, Kiri, Cooper, Joshua, Detloff, John, Drawert, Brian, Dumontier, Michel, Ermentrout, G. Bard, Faeder, James R., Freiburger, Andrew P., Fröhlich, Fabian, Funahashi, Akira, Garny, Alan, Gennari, John H., Gleeson, Padraig, Goelzer, Anne, Haiman, Zachary, Hasenauer, Jan, Hellerstein, Joseph L., Hermjakob, Henning, Hoops, Stefan, Ison, Jon C., Jahn, Diego, Jakubowski, Henry V., Jordan, Ryann, Kalaš, Matúš, König, Matthias, Liebermeister, Wolfram, Sheriff, Rahuman S.Malik, Mandal, Synchon, McDougal, Robert, Medley, J. Kyle, Mendes, Pedro, Müller, Robert, Myers, Chris J., Naldi, Aurelien, Nguyen, Tung V.N., Nickerson, David P., Olivier, Brett G., Patoliya, Drashti, Paulevé, Loïc, Petzold, Linda R., Priya, Ankita, Rampadarath, Anand K., Rohwer, Johann M., Saglam, Ali S., Singh, Dilawar, Sinha, Ankur, Snoep, Jacky, Sorby, Hugh, Spangler, Ryan, Starruß, Jörn, Thomas, Payton J., Van Niekerk, David, Weindl, Daniel, Zhang, Fengkai, Zhukova, Anna, Goldberg, Arthur P., Schaff, James C., Blinov, Michael L., Sauro, Herbert M., Moraru, Ion I., Karr, Jonathan R.

Superior Title: Shaikh , B , Smith , L P , Vasilescu , D , Marupilla , G , Wilson , M , Agmon , E , Agnew , H , Andrews , S S , Anwar , A , Beber , M E , Bergmann , F T , Brooks , D , Brusch , L , Calzone , L , Choi , K , Cooper , J , Detloff , J , Drawert , B , Dumontier , M , Ermentrout , G B , Faeder , J R , Freiburger , A P , Fröhlich , F , ....

Subject Terms: /dk/atira/pure/sustainabledevelopmentgoals/good_health_and_well_being, name=SDG 3 - Good Health and Well-being

Relation: https://research.vu.nl/en/publications/5ad91f6b-16a1-4a95-a500-b320ccdadaa1

Availability: https://doi.org/10.1093/nar/gkac331
https://research.vu.nl/en/publications/5ad91f6b-16a1-4a95-a500-b320ccdadaa1
https://hdl.handle.net/1871.1/5ad91f6b-16a1-4a95-a500-b320ccdadaa1
http://www.scopus.com/inward/record.url?scp=85134730260&partnerID=8YFLogxK
http://www.scopus.com/inward/citedby.url?scp=85134730260&partnerID=8YFLogxK

Authors: Stoll, Gautier, Naldi, Aurélien, Noël, Vincent, Viara, Eric, Barillot, Emmanuel, Kroemer, Guido, Thieffry, Denis, Calzone, Laurence

Contributors: Centre de Recherche des Cordeliers (CRC (UMR_S_1138 / U1138)), École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Université Paris Cité (UPCité), Institut Gustave Roussy (IGR), Computational systems biology and optimization (Lifeware), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Institut de biologie de l'ENS Paris (IBENS), Département de Biologie - ENS Paris, École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Institut Curie Paris, Mines Paris - PSL (École nationale supérieure des mines de Paris), Université Paris sciences et lettres (PSL), Sysra, SYSRA SARL, Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), VN and LC were partially funded by ANR-FNR project “AlgoReCell” (ANR-16-CE12-0034) and VN was partially funded by the European Union’s Horizon 2020 Programme under the PerMedCoE Project (www.permedcoe.eu), grant agreement n° 951773. The project received financial support from Inserm Cancer (ModICeD, ITMO MIC 2020)., ANR-16-CE12-0034,AlgoReCell,Modèles informatiques et algorithmes pour la prédiction de cibles de reprogrammation cellulaire avec haute fidélité et haute efficacité(2016)

Superior Title: ISSN: 2296-889X ; Frontiers in Molecular Biosciences ; https://inria.hal.science/hal-03696031 ; Frontiers in Molecular Biosciences, 2022, 9, ⟨10.3389/fmolb.2022.800152⟩.

Subject Terms: tochastic simulation, cell interactions, heterogeneous cell population, logical model, pathway modeling, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Relation: hal-03696031; https://inria.hal.science/hal-03696031; https://inria.hal.science/hal-03696031/document; https://inria.hal.science/hal-03696031/file/fmolb-09-800152.pdf

Availability: https://doi.org/10.3389/fmolb.2022.800152
https://inria.hal.science/hal-03696031
https://inria.hal.science/hal-03696031/document
https://inria.hal.science/hal-03696031/file/fmolb-09-800152.pdf

Authors: Niarakis, Anna, Waltemath, Dagmar, Glazier, James, Schreiber, Falk, Keating, Sarah, Nickerson, David, Chaouiya, Claudine, Siegel, Anne, Noël, Vincent, Hermjakob, Henning, Helikar, Tomáš, Soliman, Sylvain, Calzone, Laurence

Contributors: Laboratoire de recherche européen pour la polyarthrite rhumatoïde (GenHotel), Université d'Évry-Val-d'Essonne (UEVE)-Université Paris-Saclay, Computational systems biology and optimization (Lifeware), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), University of Medicine Greifswald, Indiana University Bloomington, Indiana University System, University of Konstanz, Monash University Melbourne, University College of London London (UCL), University of Auckland Auckland, Institut de Mathématiques de Marseille (I2M), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS), Dynamics, Logics and Inference for biological Systems and Sequences (Dyliss), Inria Rennes – Bretagne Atlantique, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-GESTION DES DONNÉES ET DE LA CONNAISSANCE (IRISA-D7), Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA), Université de Rennes (UR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-Institut National de Recherche en Informatique et en Automatique (Inria)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique (IMT Atlantique), Institut Mines-Télécom Paris (IMT)-Institut Mines-Télécom Paris (IMT)-Université de Rennes (UR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut Mines-Télécom Paris (IMT)-Institut Mines-Télécom Paris (IMT)-Institut de Recherche en Informatique et Systèmes Aléatoires (IRISA), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université de Bretagne Sud (UBS)-École normale supérieure - Rennes (ENS Rennes)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique (IMT Atlantique), Institut Mines-Télécom Paris (IMT)-Institut Mines-Télécom Paris (IMT), Centre de Bioinformatique (CBIO), Mines Paris - PSL (École nationale supérieure des mines de Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL), European Bioinformatics Institute Hinxton (EMBL-EBI), EMBL Heidelberg, University of Nebraska–Lincoln, University of Nebraska System, ANR-17-CE40-0036,SYMBIONT,Méthodes symboliques pour les réseaux biologiques(2017)

Superior Title: ISSN: 1467-5463.

Subject Terms: computational modelling, model annotations, reproducibility, systems biology, community standards, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]

Relation: hal-03690604; https://inria.hal.science/hal-03690604; https://inria.hal.science/hal-03690604/document; https://inria.hal.science/hal-03690604/file/Addressing%2520barriers%2520in%2520comprehensiveness%252C%2520accessibility%252C%2520reusability%252C%2520interoperability%2520and%2520reproducibility%2520of%2520computational%2520.pdf

Availability: https://doi.org/10.1093/bib/bbac212
https://inria.hal.science/hal-03690604
https://inria.hal.science/hal-03690604/document
https://inria.hal.science/hal-03690604/file/Addressing%2520barriers%2520in%2520comprehensiveness%252C%2520accessibility%252C%2520reusability%252C%2520interoperability%2520and%2520reproducibility%2520of%2520computational%2520.pdf

Authors: Niarakis, Anna, Thakar, Juilee, Barberis, Matteo, Rodríguez Martínez, María, Helikar, Tomáš, Birtwistle, Marc, Chaouiya, Claudine, Calzone, Laurence, Dräger, Andreas

Superior Title: Bioinformatics

Subject Terms: Message from ISCB

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9620821/; http://dx.doi.org/10.1093/bioinformatics/btac609

Availability: https://doi.org/10.1093/bioinformatics/btac609
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9620821/

Authors: Montagud, Arnau, Béal, Jonas, Tobalina, Luis, Traynard, Pauline, Subramanian, Vigneshwari, Szalai, Bence, Alföldi, Róbert, Puskás, László, Valencia, Alfonso, Barillot, Emmanuel, Saez-Rodriguez, Julio, Calzone, Laurence

Superior Title: eLife

Subject Terms: Computational and Systems Biology

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9018074/; http://www.ncbi.nlm.nih.gov/pubmed/35164900; http://dx.doi.org/10.7554/eLife.72626

Availability: https://doi.org/10.7554/eLife.72626
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9018074/
http://www.ncbi.nlm.nih.gov/pubmed/35164900

Authors: Zinovyev, Andrei, Sadovsky, Michail, Calzone, Laurence, Fouché, Aziz, Groeneveld, Clarice S., Chervov, Alexander, Barillot, Emmanuel, Gorban, Alexander N.

Superior Title: Front Mol Biosci

Subject Terms: Molecular Biosciences

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8846220/; http://dx.doi.org/10.3389/fmolb.2021.793912

Availability: https://doi.org/10.3389/fmolb.2021.793912
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8846220/

Authors: Comet, Jean-Paul, Noual, Mathilde, Richard, Adrien, Aracena, Julio, Calzone, Laurence, Demongeot, Jacques, Kaufman, Marcelle, Naldi, Aurelien, Snoussi, El Houssine, Thieffry, Denis

Subject Geographic: NEW YORK

Relation: instname: Conicyt; reponame: Repositorio Digital RI2.0; info:eu-repo/grantAgreement/Fondecyt/1090549; info:eu-repo/semantics/dataset/hdl.handle.net/10533/93477; https://doi.org/10.1007/s11538-013-9829-2; 1090549; https://hdl.handle.net/10533/128393

Availability: https://doi.org/10.1007/s11538-013-9829-2
https://hdl.handle.net/10533/128393

Authors: Guo, Tiannan, Luna, Augustin, Rajapakse, Vinodh N., Koh, Ching Chiek, Wu, Zhicheng, Liu, Wei, Sun, Yaoting, Gao, Huanhuan, Menden, Michael P., Xu, Chao, Calzone, Laurence, Martignetti, Loredana, Auwerx, Chiara, Buljan, Marija, Banaei-Esfahani, Amir, Ori, Alessandro, Iskar, Murat, Gillet, Ludovic, Bi, Ran, Zhang, Jiangnan, Zhang, Huanhuan, Yu, Chenhuan, Zhong, Qing, Varma, Sudhir, Schmitt, Uwe, Qiu, Peng, Zhang, Qiushi, Zhu, Yi, Wild, Peter J., Garnett, Mathew J., Bork, Peer, Beck, Martin, Liu, Kexin, Saez-Rodriguez, Julio, Elloumi, Fathi, Reinhold, William C., Sander, Chris, Pommier, Yves, Aebersold, Ruedi

Superior Title: In iScience 22 November 2019 21:664-680