Authors: Indranil Mukherjee, Vesna Grujčić, Michaela M. Salcher, Petr Znachor, Jaromír Seďa, Miloslav Devetter, Pavel Rychtecký, Karel Šimek, Tanja Shabarova

Superior Title: Environmental Microbiome, Vol 19, Iss 1, Pp 1-16 (2024)

Subject Terms: 18S and 16S amplicon sequencing, CARD-FISH, Freshwater, Microbial food webs, Protists, Epilimnion, Environmental sciences, GE1-350, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2524-6372

Access URL: https://doaj.org/article/0f30263c60bb4615a8f9df02c13e9f0e

Authors: Kostešić, Ema, Mitrović, Maja, Kajan, Katarina^{Aff1, Aff2}, Marković, Tamara, Hausmann, Bela^{Aff4, Aff5}, Orlić, Sandi^{Aff1, Aff2}, Pjevac, Petra^{Aff4, Aff6, IDs00248023022391_cor7}

Superior Title: Microbial Ecology. 86(4):2305-2319

Authors: Anna Katharina Wittenborn, Thorsten Bauersachs, Christiane Hassenrück, Katja Käding, Janine Wäge-Recchioni, Klaus Jürgens, Helge Wolfgang Arz, Jérôme Kaiser

Superior Title: Frontiers in Microbiology, Vol 14 (2023)

Subject Terms: Thaumarchaeota, Nitrososphaeria, intact and core GDGTs, TEX86, 16S rRNA, CARD-FISH, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2023.1216130/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/a0059389e8364297889baf527868f6f6

Authors: Alcántara-Hernández, Rocío J.^Aff2, Macek, Miroslav^Aff3, Torres-Huesca, Jesús^Aff4, Arellano-Posadas, Juan^Aff4, Valdespino-Castillo, Patricia M.^Aff5

Contributors: Alcocer, Javier, editor^Aff1

Superior Title: Lake Alchichica Limnology : The Uniqueness of a Tropical Maar Lake. :183-196

Authors: Sime-Ngando, Télesphore^Aff5, Jobard, Marlène^Aff5, Rasconi, Serena^Aff5

Contributors: Gupta, Vijai Kumar, Series Editor^{Aff1, Aff3}, Tuohy, Maria G., Series Editor^Aff2, Tuohy, Maria, editor^Aff4

Superior Title: Laboratory Protocols in Fungal Biology : Current Methods in Fungal Biology. :87-94

Authors: Bandara, Chaturanga D., Schmidt, Matthias, Davoudpour, Yalda, Stryhanyuk, Hryhoriy, Richnow, Hans H., Musat, Niculina

Superior Title: Bandara , C D , Schmidt , M , Davoudpour , Y , Stryhanyuk , H , Richnow , H H & Musat , N 2023 , ' Corrigendum : Microbial identification, high-resolution microscopy and spectrometry of the rhizosphere in its native spatial context ' , Frontiers in Plant Science , vol. 13 , 1125001 . https://doi.org/10.3389/fpls.2022.1125001

Subject Terms: CARD-FISH, correlative chemical microscopy, helium ion microscopy, London resin white embedding, rhizosphere, secondary ion mass spectrometry, soil bacteria, water-jet cutting

Availability: https://doi.org/10.3389/fpls.2022.1125001
https://hdl.handle.net/1983/32163cde-9d15-4ed3-8997-a55f30f776fd
https://research-information.bris.ac.uk/en/publications/32163cde-9d15-4ed3-8997-a55f30f776fd
http://www.scopus.com/inward/record.url?scp=85146931066&partnerID=8YFLogxK

Authors: Massé, Anaïs, Detang, Juliette, Duval, Charlotte, Duperron, Sébastien, Woo, Anthony, C, Domart-Coulon, Isabelle

Contributors: Molécules de Communication et Adaptation des Micro-organismes (MCAM), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Acquisition et Analyse de Données pour l'Histoire naturelle (2AD)

Superior Title: ISSN: 2076-2607 ; Microorganisms ; https://mnhn.hal.science/mnhn-04102589 ; Microorganisms, 2023, 11 (5), pp.1318. ⟨10.3390/microorganisms11051318⟩.

Subject Terms: Ulvophyceae, bacterial communities, microbiota, endosymbionts, salinity, 16S rDNA, metabarcoding, CARD-FISH, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis

Relation: mnhn-04102589; https://mnhn.hal.science/mnhn-04102589; https://mnhn.hal.science/mnhn-04102589/document; https://mnhn.hal.science/mnhn-04102589/file/Mass%C3%A9%20et%20al%202023.pdf

Availability: https://doi.org/10.3390/microorganisms11051318
https://mnhn.hal.science/mnhn-04102589
https://mnhn.hal.science/mnhn-04102589/document
https://mnhn.hal.science/mnhn-04102589/file/Mass%C3%A9%20et%20al%202023.pdf

Authors: Anaïs Massé, Juliette Detang, Charlotte Duval, Sébastien Duperron, Anthony C. Woo, Isabelle Domart-Coulon

Superior Title: Microorganisms; Volume 11; Issue 5; Pages: 1318

Subject Terms: Ulvophyceae, bacterial communities, microbiota, endosymbionts, salinity, 16S rDNA, metabarcoding, CARD-FISH

Subject Geographic: agris

File Description: application/pdf

Relation: Environmental Microbiology; https://dx.doi.org/10.3390/microorganisms11051318

Availability: https://doi.org/10.3390/microorganisms11051318

Authors: Chaturanga D. Bandara, Matthias Schmidt, Yalda Davoudpour, Hryhoriy Stryhanyuk, Hans H. Richnow, Niculina Musat

Superior Title: Frontiers in Plant Science, Vol 13 (2023)

Subject Terms: CARD-FISH, correlative chemical microscopy, helium ion microscopy, London resin white embedding, rhizosphere, secondary ion mass spectrometry, Plant culture, SB1-1110

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.1125001/full; https://doaj.org/toc/1664-462X; https://doaj.org/article/fc42c1761df448e49de4d1d28490665a

Availability: https://doi.org/10.3389/fpls.2022.1125001
https://doaj.org/article/fc42c1761df448e49de4d1d28490665a

Authors: Gianna Dirren-Pitsch, Dominique Bühler, Michaela M. Salcher, Barbara Bassin, Alizée Le Moigne, Martina Schuler, Jakob Pernthaler, Thomas Posch

Superior Title: Frontiers in Microbiology, Vol 13 (2022)

Subject Terms: planktonic ciliates, CARD-FISH, fluorescence in situ hybridization, lake water samples, quantitative protargol staining, ciliate quantification, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2022.1070232/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/041cdc8b82844b35b3e4e5694b34ea20

Authors: Chiriac, Maria-Cecilia^{Aff1, IDs40168022012743_cor1}, Bulzu, Paul-Adrian, Andrei, Adrian-Stefan, Okazaki, Yusuke, Nakano, Shin-ichi, Haber, Markus, Kavagutti, Vinicius Silva^{Aff1, Aff5}, Layoun, Paul^{Aff1, Aff5}, Ghai, Rohit, Salcher, Michaela M.

Superior Title: Microbiome. 10(1)

Contributors: Zhang, Haihan, Sekar, Raju, Visser, Petra M.

Subject Terms: reservoirs, lakes, surface water, sediments, DNA sequencing, CARD-FISH, ARGs, freshwater, thema EDItEUR:P Mathematics and Science:PD Science: general issues, thema EDItEUR:M Medicine and Nursing:MK Medical specialties, branches of medicine:MKF Pathology:MKFM Medical microbiology and virology, thema EDItEUR:P Mathematics and Science:PS Biology, life sciences:PSG Microbiology (non-medical)

File Description: image/jpeg

Access URL: https://directory.doabooks.org/handle/20.500.12854/74080

Authors: Birnstiel, Stéphanie, Sebastián, Marta, Romera-Castillo, Cristina

Contributors: Fundación General CSIC, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España)

Subject Terms: Plastic leaching, Microplastics, Microbial community, BONCAT, CARD-FISH, DOM

Relation: #PLACEHOLDER_PARENT_METADATA_VALUE#; info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2019-109889RJ-I00/ES/CHARACTERIZATION OF DISSOLVED ORGANIC MATTER LEACHED FROM PLASTICS INTO SEAWATER AND ITS IMPACT ON MARINE MICROBES/; info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/RTI2018-101025-B-I00/ES/FORMACION Y CAMBIO EN LA ESTRUCTURA DE LAS COMUNIDADES MICROBIANAS MARINAS A ESCALAS TEMPORALES Y ESPACIALES CORTAS: EL PAPEL DE LAS ESPECIES DE CRECIMIENTO EXPLOSIVO/; Publisher's version; https://doi.org/10.1016/j.scitotenv.2022.155264; Sí; Science of the Total Environment 834: 155264 (2022); CEX2019-000928-S; http://hdl.handle.net/10261/278898

Availability: https://doi.org/10.1016/j.scitotenv.2022.155264
http://hdl.handle.net/10261/278898

Authors: Chaturanga D. Bandara, Matthias Schmidt, Yalda Davoudpour, Hryhoriy Stryhanyuk, Hans H. Richnow, Niculina Musat

Superior Title: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: CARD-FISH, correlative chemical microscopy, Helium Ion Microscopy, London Resin White embedding, Rhizosphere, Secondary Ion Mass Spectrometry, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.668929/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/adbf02a816e84a39be69dbc37075cd5f

Authors: Magda G. Cardozo-Mino, Eduard Fadeev, Verena Salman-Carvalho, Antje Boetius

Superior Title: Frontiers in Microbiology, Vol 12 (2021)

Subject Terms: Arctic Ocean, Fram Strait, bacterioplankton, CARD-FISH, water column, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.658803/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/6c7b175dc39d4663b67b495300dd1775

Authors: Kasia Piwosz, Indranil Mukherjee, Michaela M. Salcher, Vesna Grujčić, Karel Šimek

Superior Title: Frontiers in Microbiology, Vol 12 (2021)

Subject Terms: aquatic microbial food webs, CARD-FISH, grazing by protists, protists, unicellular eukaryotes, bacterivorous, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.640066/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/3ef7d22b3aee40fe8059d414b47b742b

Authors: Bandara, Chiththaka Chaturanga Devapriya Bandara, Schmidt, Matthias, Davoudpour, Yalda, Stryhanyuk, Hryhoriy, Richnow, Hans Hermann, Musat, Niculina

Superior Title: ISSN: 1664-462X.

Subject Terms: CARD-FISH, Chemical microscopy, HIM, Nano-SIMS, Resin embedding, rhizosphere, soil bacteria, spatial distribution, Water-jet cutting

File Description: application/pdf

Relation: https://doi.org/10.48758/ufz.11158; https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=24272; https://dx.doi.org/10.3389/fpls.2021.668929

Availability: https://doi.org/10.3389/fpls.2021.668929
https://doi.org/10.48758/ufz.11158
https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=24272

Authors: Brunet, Maéva, Le Duff, Nolwen, Fuchs, Bernhard, M, Amann, Rudolf, Barbeyron, Tristan, Thomas, François

Contributors: Laboratoire de Biologie Intégrative des Modèles Marins (LBI2M), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff = Roscoff Marine Station (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Max Planck Institute for Marine Microbiology, Max-Planck-Gesellschaft, ANR-18-CE02-0001,ALGAVOR,Stratégies écologiques et métaboliques de bactéries spécialistes de la dégradation des macroalgues(2018)

Superior Title: ISSN: 0723-2020 ; Systematic and Applied Microbiology ; https://hal.sorbonne-universite.fr/hal-03417302 ; Systematic and Applied Microbiology, 2021, 44 (6), pp.126269. ⟨10.1016/j.syapm.2021.126269⟩.

Subject Terms: Zobellia, qPCR, CARD-FISH, macroalgae, marine flavobacteria, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology

Relation: hal-03417302; https://hal.sorbonne-universite.fr/hal-03417302; https://hal.sorbonne-universite.fr/hal-03417302/document; https://hal.sorbonne-universite.fr/hal-03417302/file/qPCR-FISH_SAM_revised.pdf

Availability: https://doi.org/10.1016/j.syapm.2021.126269
https://hal.sorbonne-universite.fr/hal-03417302
https://hal.sorbonne-universite.fr/hal-03417302/document
https://hal.sorbonne-universite.fr/hal-03417302/file/qPCR-FISH_SAM_revised.pdf

Authors: Pin, Lorenzo, Eiler, Alexander, Fazi, Stefano, Friberg, Nikolai

Superior Title: Pin , L , Eiler , A , Fazi , S & Friberg , N 2021 , ' Two different approaches of microbial community structure characterization in riverine epilithic biofilms under multiple stressors conditions : Developing molecular indicators ' , Molecular Ecology Resources , vol. 21 , no. 4 , pp. 1200-1215 . https://doi.org/10.1111/1755-0998.13341

Subject Terms: biofilm, bioindicator, CARD-FISH, prokaryotes, river, sequencing

File Description: application/pdf

Availability: https://doi.org/10.1111/1755-0998.13341
https://curis.ku.dk/portal/da/publications/two-different-approaches-of-microbial-community-structure-characterization-in-riverine-epilithic-biofilms-under-multiple-stressors-conditions(44193952-4954-48dd-b673-11eb295f1a48).html
https://curis.ku.dk/ws/files/306678861/Molecular_Ecology_Resources_2021_Pin_Two_different_approaches_of_microbial_community_structure_characterization_in.pdf

Authors: Montes, T., Guerrero-Feijóo, E. (Elisa), Moreira-Coello, V. (Víctor), Bode, A. (Antonio), Ruiz-Villarreal, M. (Manuel), Mouriño-Carballido, B. (Beatriz), Varela, M.M. (Marta María)

Subject Terms: Bacteria, CARD-FISH, 454 pyrosequencing, Microplankton, Summer upwelling relaxation, Upwelling pulse, NW Spain

Relation: https://doi.org/10.1016/j.ecss.2020.106791; http://hdl.handle.net/10508/14727; http://hdl.handle.net/10261/316740; 25792

Availability: https://doi.org/10.1016/j.ecss.2020.106791
http://hdl.handle.net/10508/14727
http://hdl.handle.net/10261/316740