Authors: Schapiro, Denis, Sokolov, Artem, Yapp, Clarence, Chen, Yu-An, Muhlich, Jeremy L, Hess, Joshua, Creason, Allison L, Nirmal, Ajit J, Baker, Gregory J, Nariya, Maulik K, Lin, Jia-Ren, Maliga, Zoltan, Jacobson, Connor A, Hodgman, Matthew W, Ruokonen, Juha, Farhi, Samouil L, Abbondanza, Domenic, McKinley, Eliot T, Persson, Daniel, Betts, Courtney, Sivagnanam, Shamilene, Regev, Aviv, Goecks, Jeremy, Coffey, Robert J, Coussens, Lisa M, Santagata, Sandro, Sorger, Peter K
Contributors: Massachusetts Institute of Technology. Department of Biology
Superior Title: Nature
File Description: application/pdf
Relation: Nature Methods; https://hdl.handle.net/1721.1/147096; Schapiro, Denis, Sokolov, Artem, Yapp, Clarence, Chen, Yu-An, Muhlich, Jeremy L et al. 2022. "MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging." Nature Methods, 19 (3).
Availability: https://hdl.handle.net/1721.1/147096
Authors: Coy, ShannonAff1, Aff2, Aff3, Wang, ShuAff2, Aff3, Aff4, Stopka, Sylwia A., Lin, Jia-RenAff2, Aff3, Yapp, ClarenceAff2, Aff3, Ritch, Cecily C.Aff1, Aff2, Salhi, Lisa, Baker, Gregory J.Aff2, Aff3, Rashid, RumanaAff1, Aff2, Aff7, Baquer, Gerard, Regan, Michael, Khadka, PrasiddaAff8, Aff9, Cole, Kristina A., Hwang, Jaeho, Wen, Patrick Y.Aff11, Aff12, Bandopadhayay, PratitiAff8, Aff9, Santi, MariaritaAff13, Aff14, De Raedt, Thomas, Ligon, Keith L.Aff1, Aff8, Aff15, Aff16, Agar, Nathalie Y. R., Sorger, Peter K.Aff2, Aff3, Touat, MehdiAff6, Aff11, IDs4146702232430w_cor22, Santagata, SandroAff1, Aff2, Aff3, IDs4146702232430w_cor23
Superior Title: Nature Communications. 13(1)
Authors: Schapiro, DenisAff1, Aff2, Aff3, Aff18, Sokolov, ArtemAff1, Aff2, Aff4, Yapp, ClarenceAff1, Aff2, Aff5, Chen, Yu-AnAff1, Aff2, Muhlich, Jeremy L.Aff1, Aff2, Hess, Joshua, Creason, Allison L., Nirmal, Ajit J.Aff1, Aff2, Aff8, Baker, Gregory J.Aff1, Aff2, Nariya, Maulik K.Aff1, Aff2, Lin, Jia-RenAff1, Aff2, Maliga, ZoltanAff1, Aff2, Jacobson, Connor A.Aff1, Aff2, Hodgman, Matthew W.Aff2, Aff9, Ruokonen, JuhaAff1, Aff2, Farhi, Samouil L., Abbondanza, Domenic, McKinley, Eliot T.Aff10, Aff11, Persson, DanielAff7, Aff12, Betts, Courtney, Sivagnanam, Shamilene, Regev, AvivAff3, Aff14, Aff19, Goecks, JeremyAff7, Aff12, Coffey, Robert J., Coussens, Lisa M.Aff12, Aff13, Santagata, SandroAff1, Aff2, Aff16, Sorger, Peter K.Aff1, Aff2, Aff17, IDs4159202101308y_cor27
Superior Title: Nature Methods: Techniques for life scientists and chemists. 19(3):311-315
Authors: Notarangelo, Giulia, Spinelli, Jessica B., Perez, Elizabeth M., Baker, Gregory J., Kurmi, Kiran, Elia, Ilaria, Stopka, Sylwia A., Baquer, Gerard, Lin, Jia-Ren, Golby, Alexandra J., Joshi, Shakchhi, Baron, Heide F., Drijvers, Jefte M., Georgiev, Peter, Ringel, Alison E., Zaganjor, Elma, McBrayer, Samuel K., Sorger, Peter K., Sharpe, Arlene H., Wucherpfennig, Kai W., Santagata, Sandro, Agar, Nathalie Y. R., Suvà, Mario L., Haigis, Marcia C.
Superior Title: Science
Subject Terms: Article
Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9629749/; http://www.ncbi.nlm.nih.gov/pubmed/36173860; http://dx.doi.org/10.1126/science.abj5104
Authors: Baker, Gregory J, Novikov, Edward, Zhao, Ziyuan, Vallius, Tuulia, Davis, Janae A, Lin, Jia-Ren, Muhlich, Jeremy L, Mittendorf, Elizabeth A, Santagata, Sandro, Guerriero, Jennifer L, Sorger, Peter K
Superior Title: bioRxiv
Subject Terms: CyLinter, cancer, multiplex image analysis, quality control (QC), single-cell data, spatial omics, spatial profiling
Relation: https://doi.org/10.1101/2023.11.01.565120; https://pubmed.ncbi.nlm.nih.gov/37961235; https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10634977/
Authors: Iorgulescu, J. Bryan, Ruthen, Neil, Ryuhjin Ahn, Panagioti, Eleni, Gokhale, Prafulla C., Neagu, Martha, Speranza, Maria C., Eschle, Benjamin K., Soroko, Kara M., Piranlioglu, Raziye, Datta, Meenal, Krishnan, Shanmugarajan, Yates, Kathleen B., Baker, Gregory J., Jain, Rakesh K., Suvà, Mario L., Neuberg, Donna, White, Forest M., Chiocca, E. Antonio, Freeman, Gordon J.
Superior Title: Frontiers in Immunology; 2024, p01-18, 18p
Subject Terms: ANTIGEN presentation, HUMAN biology, RAS oncogenes, IMMUNOTHERAPY, PROTEIN analysis
Authors: Gerosa, Luca, Chidley, Christopher, Fröhlich, Fabian, Sanchez, Gabriela, Lim, Sang Kyun, Muhlich, Jeremy, Chen, Jia-Yun, Vallabhaneni, Sreeram, Baker, Gregory J, Schapiro, Denis, Atanasova, Mariya I, Chylek, Lily A, Shi, Tujin, Yi, Lian, Nicora, Carrie D, Claas, Allison, Ng, Thomas SC, Kohler, Rainer H, Lauffenburger, Douglas A, Weissleder, Ralph, Miller, Miles A, Qian, Wei-Jun, Wiley, H Steven, Sorger, Peter K
Contributors: Massachusetts Institute of Technology. Department of Biological Engineering
Superior Title: Elsevier
File Description: application/pdf
Relation: Cell Systems; https://hdl.handle.net/1721.1/136137
Availability: https://hdl.handle.net/1721.1/136137
Authors: Schapiro, Denis, Sokolov, Artem, Yapp, Clarence, Chen, Yu-An, Muhlich, Jeremy L., Hess, Joshua, Creason, Allison L., Nirmal, Ajit J., Baker, Gregory J., Nariya, Maulik K., Lin, Jia-Ren, Maliga, Zoltan, Jacobson, Connor A., Hodgman, Matthew W., Ruokonen, Juha, Farhi, Samouil L., Abbondanza, Domenic, McKinley, Eliot T., Persson, Daniel, Betts, Courtney, Sivagnanam, Shamilene, Regev, Aviv, Goecks, Jeremy, Coffey, Robert J., Coussens, Lisa M., Santagata, Sandro, Sorger, Peter K.
Contributors: U.S. Department of Health & Human Services | NIH | National Cancer Institute, Ludwig Institute for Cancer Research, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung, Damon Runyon Cancer Research Foundation
Superior Title: Nature Methods ; ISSN 1548-7091 1548-7105
Subject Terms: Cell Biology, Molecular Biology, Biochemistry, Biotechnology
Authors: Shah, Diana, Comba, Andrea, Faisal, Syed M., Kadiyala, Padma, Baker, Gregory J., Alghamri, Mahmoud S., Doherty, Robert, Zamler, Daniel, Nuñez, Gabriel, Castro, Maria G., Lowenstein, Pedro R.
Contributors: National Institutes of Health
Superior Title: OncoImmunology ; volume 10, issue 1 ; ISSN 2162-402X
Availability: https://doi.org/10.1080/2162402x.2021.1939601
Authors: Ringel, Alison E., Drijvers, Jefte M., Baker, Gregory J., Catozzi, Alessia, García-Cañaveras, Juan C., Gassaway, Brandon M., Miller, Brian C., Juneja, Vikram R., Nguyen, Thao H., Joshi, Shakchhi, Yao, Cong-Hui, Yoon, Haejin, Sage, Peter T., LaFleur, Martin W., Trombley, Justin D., Jacobson, Connor A., Maliga, Zoltan, Gygi, Steven P., Sorger, Peter K., Rabinowitz, Joshua D., Sharpe, Arlene H., Haigis, Marcia C.
Superior Title: Cell
Subject Terms: Article
Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8064125/; http://www.ncbi.nlm.nih.gov/pubmed/33301708; http://dx.doi.org/10.1016/j.cell.2020.11.009
Availability:
https://doi.org/10.1016/j.cell.2020.11.009
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8064125/
http://www.ncbi.nlm.nih.gov/pubmed/33301708
Authors: Iorgulescu, J. Bryan, Gokhale, Prafulla C., Speranza, Maria C., Eschle, Benjamin K., Poitras, Michael J., Wilkens, Margaret K., Soroko, Kara M., Chhoeu, Chhayheng, Knott, Aine, Gao, Yan, Lim-Fat, Mary Jane, Baker, Gregory J., Bonal, Dennis M., Nguyen, Quang-Dé, Grant, Gareth R. L., Ligon, Keith L., Sorger, Peter K., Chiocca, E. Antonio, Anderson, Ana C., Kirschmeier, Paul T., Sharpe, Arlene H., Freeman, Gordon J., Reardon, David A.
Superior Title: Clin Cancer Res
Subject Terms: Article
Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8034990/; http://www.ncbi.nlm.nih.gov/pubmed/33239433; http://dx.doi.org/10.1158/1078-0432.CCR-20-2291
Authors: Gerosa, Luca, Chidley, Christopher, Fröhlich, Fabian, Sanchez, Gabriela, Lim, Sang Kyun, Muhlich, Jeremy, Chen, Jia-Yun, Vallabhaneni, Sreeram, Baker, Gregory J., Schapiro, Denis, Atanasova, Mariya I., Chylek, Lily A., Shi, Tujin, Yi, Lian, Nicora, Carrie D., Claas, Allison, Ng, Thomas S.C., Kohler, Rainer H., Lauffenburger, Douglas A., Weissleder, Ralph, Miller, Miles A., Qian, Wei-Jun, Wiley, H. Steven, Sorger, Peter K.
Contributors: Human Frontier Science Program, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung, U.S. Department of Energy, National Cancer Institute
Superior Title: Cell Systems ; volume 11, issue 5, page 478-494.e9 ; ISSN 2405-4712
Subject Terms: Cell Biology, Histology, Pathology and Forensic Medicine
Authors: Baker, Gregory J., Muhlich, Jeremy L., Palaniappan, Sucheendra K., Moore, Jodene K., Davis, Stephanie H., Santagata, Sandro, Sorger, Peter K.
Contributors: National Cancer Institute, American Cancer Society
Superior Title: Cell Systems ; volume 11, issue 3, page 272-285.e9 ; ISSN 2405-4712
Subject Terms: Cell Biology, Histology, Pathology and Forensic Medicine
Authors: Nalle, Sam C., Zuo, Li, Ong, Ma. Lora Drizella M., Singh, Gurminder, Worthylake, Alicia M., Choi, Wangsun, Manresa, Mario Cabrero, Southworth, Anna P., Edelblum, Karen L., Baker, Gregory J., Joseph, Nora E., Savage, Peter A., Turner, Jerrold R.
Subject Terms: Research Article
Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355225/; http://www.ncbi.nlm.nih.gov/pubmed/30667372; http://dx.doi.org/10.1172/JCI98554
Authors: Perry, Kym D., Baker, Gregory J., Powis, Kevin J., Kent, Joanne K., Ward, Christopher M., Baxter, Simon W.
Subject Terms: Research Article
Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5975261/; http://www.ncbi.nlm.nih.gov/pubmed/29843598; http://dx.doi.org/10.1186/s12862-018-1183-4
Authors: Baker, Gregory J., Yadav, Viveka Nand, Motsch, Sebastien, Koschmann, Carl, Calinescu, Anda-Alexandra, Mineharu, Yohei, Camelo-Piragua, Sandra Ines, Orringer, Daniel, Bannykh, Serguei, Nichols, Wesley S., deCarvalho, Ana C., Mikkelsen, Tom, Castro, Maria G., Lowenstein, Pedro R.
Superior Title: In Neoplasia July 2014 16(7):543-561
Authors: Fallahi‐Sichani, Mohammad, Becker, Verena, Izar, Benjamin, Baker, Gregory J, Lin, Jia‐Ren, Boswell, Sarah A, Shah, Parin, Rotem, Asaf, Garraway, Levi A, Sorger, Peter K
Subject Terms: Articles
Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5248573/; http://www.ncbi.nlm.nih.gov/pubmed/28069687; http://dx.doi.org/10.15252/msb.20166796
Authors: Shah, Diana, Kadiyala, Padma, Kamran, Neha, Baker, Gregory J, Doherty, Robert, Zamler, Dan, Nuñez, Gabriel, Castro, Maria G, Lowenstein, Pedro R
Superior Title: Neuro-Oncology ; volume 19, issue suppl_6, page vi118-vi118 ; ISSN 1522-8517 1523-5866
Subject Terms: Cancer Research, Neurology (clinical), Oncology
Authors: Lynes, John, Wibowo, Mia, Koschmann, Carl, Baker, Gregory J., Saxena, Vandana, Muhammad, A. K. M. G., Bondale, Niyati, Klein, Julia, Assi, Hikmat, Lieberman, Andrew P., Castro, Maria G., Lowenstein, Pedro R.
Superior Title: Neurotherapeutics: The Journal of the American Society for Experimental NeuroTherapeutics. July 2014 11(3):623-635
Authors: Yadav, Viveka Nand, Zamler, Daniel, Baker, Gregory J., Kadiyala, Padma, Erdreich-Epstein, Anat, DeCarvalho, Ana C., Mikkelsen, Tom, Castro, Maria G., Lowenstein, Pedro R.
Subject Terms: Research Paper
Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5341257/; http://www.ncbi.nlm.nih.gov/pubmed/27863376; http://dx.doi.org/10.18632/oncotarget.13295