Authors: Najm, Matthieu^{Aff1, Aff2, Aff3}, Cornet, Matthieu^{Aff1, Aff2, Aff3}, Albergante, Luca^{Aff1, Aff2, Aff3}, Zinovyev, Andrei^{Aff1, Aff2, Aff3}, Sermet-Gaudelus, Isabelle^{Aff4, Aff5, Aff6}, Stoven, Véronique^{Aff1, Aff2, Aff3}, Calzone, Laurence^{Aff1, Aff2, Aff3}, Martignetti, Loredana^{Aff1, Aff2, Aff3, IDs4154002400331x_cor8}

Superior Title: npj Systems Biology and Applications. 10(1)

Authors: Wallis, Jamie, Azqueta-Gavaldon, Andres, Ananthakumar, Thanusha, Dürichen, Robert, Albergante, Luca

Superior Title: In Informatics in Medicine Unlocked 2022 32

Authors: Al Mamun, Mohammed, Albergante, Luca, Blow, J. Julian, Newman, Thea

Contributors: Scottish Universities Life Sciences Alliance, Cancer Research UK, Wellcome Trust, National Institutes of Health (US), Al Mamun, Mohammed 0000-0003-3438-3997, Albergante, Luca 0000-0001-8151-6989, Blow, J. Julian 0000-0002-9524-5849, Newman, Thea 0000-0002-0332-337X

Subject Terms: DNA replication, Double fork stalls, Embryo development, Eutely, Polyploidy, Robustness, Theoretical analysis

Relation: Postprint; https://doi.org/10.1088/1478-3975/ab8c2f; Sí; Physical Biology (2020); http://hdl.handle.net/10261/209753

Availability: https://doi.org/10.1088/1478-3975/ab8c2f
http://hdl.handle.net/10261/209753

Authors: Palmer, Sam, Albergante, Luca, Blackburn, Clare C., Newman, T. J.

Superior Title: Proceedings of the National Academy of Sciences of the United States of America, 2018 May 01. 115(19), E4319-E4321.

Access URL: https://www.jstor.org/stable/26509600

Authors: Palmer, Sam, Albergante, Luca, Blackburn, Clare C., Newman, T. J.

Superior Title: Proceedings of the National Academy of Sciences of the United States of America, 2018 Feb . 115(8), 1883-1888.

Access URL: https://www.jstor.org/stable/26507575

Authors: Chen, Huidong, Albergante, Luca, Hsu, Jonathan Y., Lareau, Caleb A., Lo Bosco, Giosuè, Guan, Jihong, Zhou, Shuigeng, Gorban, Alexander N., Bauer, Daniel E., Aryee, Martin J., Langenau, David M., Zinovyev, Andrei, Buenrostro, Jason D., Yuan, Guo-Cheng, Pinello, Luca

Contributors: Chen, Huidong, Albergante, Luca, Hsu, Jonathan Y., Lareau, Caleb A., Lo Bosco, Giosuè, Guan, Jihong, Zhou, Shuigeng, Gorban, Alexander N., Bauer, Daniel E., Aryee, Martin J., Langenau, David M., Zinovyev, Andrei, Buenrostro, Jason D., Yuan, Guo-Cheng, Pinello, Luca

Subject Terms: Single cell analysi, developmental trajectories visualization

Relation: info:eu-repo/semantics/altIdentifier/pmid/31015418; info:eu-repo/semantics/altIdentifier/wos/WOS:000465202300008; volume:10; issue:1; firstpage:1; lastpage:14; numberofpages:14; journal:NATURE COMMUNICATIONS; http://hdl.handle.net/10447/352785; info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85064910097

Availability: https://doi.org/10.1038/s41467-019-09670-4
http://hdl.handle.net/10447/352785

Authors: Albergante, Luca, Mirkes, Evgeny, Bac, Jonathan, Chen, Huidong, Martin, Alexis, Faure, Louis, Barillot, Emmanuel, Pinello, Luca, Gorban, Alexander, Zinovyev, Andrei

Superior Title: Entropy 22(296)

Subject Terms: data approximation, principal graphs, principal trees, topological grammars, software

Relation: info:eu-repo/grantAgreement/EC/H2020/826121/; https://zenodo.org/communities/ipc; https://zenodo.org/record/3699090; https://doi.org/10.3390/e22030296; oai:zenodo.org:3699090

Availability: https://doi.org/10.3390/e22030296
https://doi.org/10.5281/zenodo.3699121
https://zenodo.org/record/3699090

Authors: Kieffer, Yann, Hocine, Hocine Rachid, Gentric, Géraldine, Pelon, Floriane, Bernard, Charles, Bourachot, Brigitte, Lameiras, Sonia, Albergante, Luca, Bonneau, Claire, Guyard, Alice, Tarte, Karin, Zinovyev, Andrei, Baulande, Sylvain, Zalcman, Gérard, Vincent-Salomon, Anne, Mechta-Grigoriou, Fatima

Contributors: Institut Curie Paris, Genomics of Excellence (ICGex) Platform, Institut Curie Research Center, Cancer et génome: Bioinformatique, biostatistiques et épidémiologie d'un système complexe, Mines Paris - PSL (École nationale supérieure des mines de Paris), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Institut Curie Paris -Institut National de la Santé et de la Recherche Médicale (INSERM), CIC - CHU Bichat, Institut National de la Santé et de la Recherche Médicale (INSERM), Microenvironment, Cell Differentiation, Immunology and Cancer (MICMAC), Université de Rennes (UR)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique ), INCa-DGOS-4654, Institut National Du Cancer, Scientific council, Fondation pour la Recherche Médicale, Labelisation, Ligue Contre le Cancer, Incentive and Cooperative program, Institut Curie, Grand Prix, Fondation Simone et Cino Del Duca, ANR-10-INBS-09-08, Agence Nationale de la Recherche, PC201317, Institut National de la Sante et de la Recherche Medicale, Grand Prix, Le Cancer du sein, Parlons-en, ANR-19-P3IA-0001,PRAIRIE,PaRis Artificial Intelligence Research InstitutE(2019)

Superior Title: EISSN: 2159-8290 ; Cancer Discovery ; https://hal.science/hal-02890211 ; Cancer Discovery, 2020, 10 (9), pp.1330-1351. ⟨10.1158/2159-8290.CD-19-1384⟩

Subject Terms: [SDV.CAN]Life Sciences [q-bio]/Cancer

Relation: info:eu-repo/semantics/altIdentifier/pmid/32434947; hal-02890211; https://hal.science/hal-02890211; https://hal.science/hal-02890211/document; https://hal.science/hal-02890211/file/Kieffer%20et%20al-2020-Single-cell%20analysis%20reveals%20fibroblast%20clusters%20linked%20to%20immunotherapy.pdf; PUBMED: 32434947

Availability: https://doi.org/10.1158/2159-8290.CD-19-1384
https://hal.science/hal-02890211
https://hal.science/hal-02890211/document
https://hal.science/hal-02890211/file/Kieffer%20et%20al-2020-Single-cell%20analysis%20reveals%20fibroblast%20clusters%20linked%20to%20immunotherapy.pdf

Authors: Carr, Oliver, Jovanovic, Stojan, Albergante, Luca, Andreotti, Fernando, Dürichen, Robert, Lipunova, Nadia, Baxter, Janie, Khan, Rabia, Irving, Benjamin

Subject Terms: Computer Science - Machine Learning

Relation: http://arxiv.org/abs/2012.13233

Availability: http://arxiv.org/abs/2012.13233

Authors: Mamun, Mohammed Al, Albergante, Luca, Moreno, Alberto, Carrington, James T., Blow, J. Julian, Newman, Timothy J.

Superior Title: Proceedings of the National Academy of Sciences of the United States of America, 2016 Sep . 113(39), E5765-E5774.

Access URL: https://www.jstor.org/stable/26471888

Authors: Moreno, Alberto, Carrington, Jamie T., Albergante, Luca, Mamun, Mohammed Al, Haagensen, Emma J., Komseli, Eirini-Stavroula, Gorgoulis, Vassilis G., Newman, Timothy J., Blow, J. Julian

Superior Title: Proceedings of the National Academy of Sciences of the United States of America, 2016 Sep . 113(39), E5757-E5764.

Access URL: https://www.jstor.org/stable/26471887

Authors: Liu, Dianbo^{Aff1, Aff3, Aff4}, Albergante, Luca^{Aff1, Aff2}, Newman, T. J.^{Aff1, Aff5}, Horn, David^{Aff1, Aff6}

Superior Title: Scientific Reports. 8(1)

Authors: Albergante, Luca, Mirkes, Evgeny M., Chen, Huidong, Martin, Alexis, Faure, Louis, Barillot, Emmanuel, Pinello, Luca, Gorban, Alexander N., Zinovyev, Andrei

Subject Terms: Computer Science - Machine Learning, Quantitative Biology - Quantitative Methods, Statistics - Machine Learning

Relation: http://arxiv.org/abs/1804.07580; Entropy 22, no. 3: 296, 2020

Availability: https://doi.org/10.3390/e22030296
http://arxiv.org/abs/1804.07580

Authors: Liu, Dianbo, Albergante, Luca, Newman, Timothy J.

Superior Title: Liu , D , Albergante , L & Newman , T J 2017 , ' Universal attenuators and their interactions with feedback loops in gene regulatory networks ' Nucleic Acids Research , vol 45 , no. 12 , pp. 7078-7093 . DOI:10.1093/nar/gkx485

Subject Terms: feedback, genes, mathematics, tuberculosis

File Description: application/pdf

Availability: https://doi.org/10.1093/nar/gkx485
http://discovery.dundee.ac.uk/portal/en/research/universal-attenuators-and-their-interactions-with-feedback-loops-in-gene-regulatory-networks(1c900326-119a-4382-bdb4-1f86270eaf8f).html
http://hdl.handle.net/10588/1c900326-119a-4382-bdb4-1f86270eaf8f
http://discovery.dundee.ac.uk/ws/files/16632694/gkx485.pdf

Authors: Liu, Dianbo, Albergante, Luca

Subject Terms: Computer Science - Social and Information Networks

Relation: http://arxiv.org/abs/1707.05213

Availability: http://arxiv.org/abs/1707.05213

Authors: Albergante, Luca^Aff19, Timmis, Jon^{Aff20, Aff21}, Andrews, Paul^Aff20, Beattie, Lynette^Aff22, Kaye, Paul M.^Aff22

Contributors: Hutchison, David, editor^Aff1, Kanade, Takeo, editor^Aff2, Kittler, Josef, editor^Aff3, Kleinberg, Jon M., editor^Aff4, Mattern, Friedemann, editor^Aff5, Mitchell, John C., editor^Aff6, Naor, Moni, editor^Aff7, Nierstrasz, Oscar, editor^Aff8, Pandu Rangan, C., editor^Aff9, Steffen, Bernhard, editor^Aff10, Sudan, Madhu, editor^Aff11, Terzopoulos, Demetri, editor^Aff12, Tygar, Doug, editor^Aff13, Vardi, Moshe Y., editor^Aff14, Weikum, Gerhard, editor^Aff15, Hart, Emma, editor^Aff16, McEwan, Chris, editor^Aff16, Timmis, Jon, editor^Aff17, Hone, Andy, editor^Aff18

Superior Title: Artificial Immune Systems : 9th International Conference, ICARIS 2010, Edinburgh, UK, July 26-29, 2010. Proceedings. 6209:1-3

Authors: Dayal, Jasbani H S, Albergante, Luca, Newman, Timothy J, South, Andrew P

Contributors: Scottish Universities Life Sciences Alliance, National Cancer Institute

Superior Title: Convergent Science Physical Oncology ; volume 1, issue 2, page 025001 ; ISSN 2057-1739

Availability: https://doi.org/10.1088/2057-1739/1/2/025001

Authors: Albergante, Luca, Blow, J. Julian, Newman, Timothy J.

Superior Title: Albergante , L , Blow , J J & Newman , T J 2014 , ' Buffered Qualitative Stability explains the robustness and evolvability of transcriptional networks ' eLife , vol 3 , e02863 . DOI:10.7554/eLife.02863.001

File Description: application/pdf

Availability: https://doi.org/10.7554/eLife.02863.001
http://discovery.dundee.ac.uk/portal/en/research/buffered-qualitative-stability-explains-the-robustness-and-evolvability-of-transcriptional-networks(bff21f96-de65-45cd-84e2-fadf470c187f).html
http://hdl.handle.net/10588/bff21f96-de65-45cd-84e2-fadf470c187f
http://discovery.dundee.ac.uk/ws/files/7795117/e02863.full.pdf
http://elifesciences.org/content/3/e02863/abstract-1

Authors: Tinti, Michele, Dissanayake, Kumara, Synowsky, Silvia, Albergante, Luca, Mackintosh, Carol

Superior Title: Tinti , M , Dissanayake , K , Synowsky , S , Albergante , L & Mackintosh , C 2014 , ' Identification of 2R-ohnologue gene families displaying the same mutation-load skew in multiple cancers ' Open Biology , vol 4 , no. May , 140029 . DOI:10.1098/rsob.140029

File Description: application/pdf

Availability: https://doi.org/10.1098/rsob.140029
http://discovery.dundee.ac.uk/portal/en/research/identification-of-2rohnologue-gene-families-displaying-the-same-mutationload-skew-in-multiple-cancers(679bcde5-0d6d-44b3-8d2c-49a0684fde4a).html
http://hdl.handle.net/10588/679bcde5-0d6d-44b3-8d2c-49a0684fde4a
http://discovery.dundee.ac.uk/ws/files/8952690/140029.full.pdf

Authors: Albergante, Luca, Bac, Jonathan, Zinovyev, Andrei

Superior Title: 2019 International Joint Conference on Neural Networks (IJCNN)

Availability: https://doi.org/10.1109/ijcnn.2019.8852450
http://xplorestaging.ieee.org/ielx7/8840768/8851681/08852450.pdf?arnumber=8852450