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182
Relative abundance of prokaryotes in bacterial mat covered cold seep sediments of the Nile Deep Sea Fan

Authors: Grünke, Stefanie, Boetius, Antje

Subject Terms: Acrobacter spp., targeted with ARC94 oligonucleotide FISH-probe, Amon Mud Volcano, Anaerobic methanotrophic archaea-1, targeted with ANME-1-350 oligonucleotide FISH-probe, Anaerobic methanotrophic archaea-2a, targeted with ANME-2a-647 oligonucleotide FISH-probe, Anaerobic methanotrophic archaea-3, targeted with ANME-3-1249 oligonucleotide FISH-probe, Archaea, targed with ARCH915 oligonucleotide FISH-probe, Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe, BIONIL, Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH), DEPTH, sediment/rock, Desulfusarcina/Desulfococcus, targeted with DSS658 oligonucleotide FISH-probe, Event label, Fluorescence determination of DAPI stain, HERMES, Hotspot Ecosystem Research on the Margins of European Seas, Latitude of event, Longitude of event, M70/2a, M70/2a_760_PUC-40

Subject Geographic: MEDIAN LATITUDE: 32.423223 * MEDIAN LONGITUDE: 31.255873 * SOUTH-BOUND LATITUDE: 32.367690 * WEST-BOUND LONGITUDE: 30.352170 * NORTH-BOUND LATITUDE: 32.533150 * EAST-BOUND LONGITUDE: 31.711030 * DATE/TIME START: 2006-10-25T01:01:00 * DATE/TIME END: 2006-10-29T21:39:00 * MINIMUM DEPTH, sediment/rock: 0.005 m * MAXIMUM DEPTH, sediment/rock: 0.150 m

Time: 760-40, 765-49, 773-38

File Description: text/tab-separated-values, 143 data points

Relation: https://doi.org/10.1594/PANGAEA.810017; Grünke, Stefanie; Felden, Janine; Lichtschlag, Anna; Girnth, Anne-Christin; de Beer, Dirk; Wenzhöfer, Frank; Boetius, Antje (2011): Niche differentiation among mat-forming, sulfide-oxidizing bacteria at cold seeps of the Nile Deep Sea Fan (Eastern Mediterranean Sea). Geobiology, 9(4), 330-348, https://doi.org/10.1111/j.1472-4669.2011.00281.x; https://doi.pangaea.de/10.1594/PANGAEA.818003; https://doi.org/10.1594/PANGAEA.818003

Availability: https://doi.org/10.1594/PANGAEA.818003
https://doi.org/10.1594/PANGAEA.810017
https://doi.org/10.1111/j.1472-4669.2011.00281.x

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186
(Table 1) In situ geochemical parameters of Lost Hammer sediment and overlying spring water, Canadian Arctic

Authors: Niederberger, Thomas D, Perreault, Nancy N, Tille, Stephanie, Lollar, Barbara Sherwood, Lacrampe-Couloume, Georges, Andersen, Dale, Greer, Charles W, Pollard, Wayne H, Whyte, Lyle G

Subject Terms: Anaerobic methanotrophic archaea-1, targeted with ANME-1-350 oligonucleotide FISH-probe, Archaea, targed with ARCH915 oligonucleotide FISH-probe, Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe, Canadian Arctic, Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH), Conductivity, Counts, DATE/TIME, Fluorescence determination of DAPI stain, HAND, Hydrogen sulfide, Lost_Hammer, Oxidation reduction (RedOx) potential, Oxygen, pH, Salinity, Sampling by hand, Standard deviation, Temperature, water, Total dissolved solids

Subject Geographic: LATITUDE: 79.076780 * LONGITUDE: -90.211450 * DATE/TIME START: 2005-07-01T00:00:00 * DATE/TIME END: 2008-04-01T00:00:00

File Description: text/tab-separated-values, 49 data points

Relation: https://doi.org/10.1594/PANGAEA.817602; Niederberger, Thomas D; Perreault, Nancy N; Tille, Stephanie; Lollar, Barbara Sherwood; Lacrampe-Couloume, Georges; Andersen, Dale; Greer, Charles W; Pollard, Wayne H; Whyte, Lyle G (2010): Microbial characterization of a subzero, hypersaline methane seep in the Canadian High Arctic. The ISME Journal, 4(10), 1326-1339, https://doi.org/10.1038/ismej.2010.57; https://doi.pangaea.de/10.1594/PANGAEA.817600; https://doi.org/10.1594/PANGAEA.817600

Availability: https://doi.org/10.1594/PANGAEA.817600
https://doi.org/10.1594/PANGAEA.817602
https://doi.org/10.1038/ismej.2010.57

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187
(Table T1) Total procaryotes, and living bacteria and archaea in black shales of ODP Leg 207 sites

Authors: Schippers, Axel, Neretin, Lev N

Superior Title: Supplement to: Schippers, Axel; Neretin, Lev N (2006): Data report: Microbiological AODC and CARD-FISH analysis of black shale samples from the Demerara Rise, ODP Leg 207. In: Mosher, DC; Erbacher, J; Malone, MJ (eds.) Proceedings of the Ocean Drilling Program, Scientific Results, College Station, TX (Ocean Drilling Program), 207, 1-6, https://doi.org/10.2973/odp.proc.sr.207.105.2006

Subject Terms: 207-1257C, 207-1258B, 207-1259C, 207-1261B, Acridine Orange Direct Counting (AODC), Archaea, Bacteria, abundance, Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH), DEPTH, sediment/rock, DRILL, Drilling/drill rig, DSDP/ODP/IODP sample designation, Event label, Joides Resolution, Leg207, North Atlantic Ocean, Ocean Drilling Program, ODP, Prokaryotes, abundance as single cells, Sample code/label, Sample comment, Walvis Ridge, Southeast Atlantic Ocean

Subject Geographic: MEDIAN LATITUDE: 9.308948 * MEDIAN LONGITUDE: -54.397893 * SOUTH-BOUND LATITUDE: 9.048630 * WEST-BOUND LONGITUDE: -54.733030 * NORTH-BOUND LATITUDE: 9.453430 * EAST-BOUND LONGITUDE: -54.199480 * DATE/TIME START: 2003-01-21T13:20:00 * DATE/TIME END: 2003-10-28T10:10:00 * MINIMUM DEPTH, sediment/rock: 105.7 m * MAXIMUM DEPTH, sediment/rock: 643.0 m

File Description: text/tab-separated-values, 90 data points

Relation: https://doi.pangaea.de/10.1594/PANGAEA.776050; https://doi.org/10.1594/PANGAEA.776050

Availability: https://doi.org/10.1594/PANGAEA.776050
https://doi.org/10.2973/odp.proc.sr.207.105.2006

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188
Dissertation/ Thesis
Characterizing iron reducing microorganisms from anoxic ferruginous lake sediments

Authors: Costa, Bianca Francesca

Contributors: Glass, Jennifer B., Pavlostathis, Spyros G., School of Earth and Atmospheric Sciences, College of Sciences, Earth and Atmospheric Sciences

Subject Terms: CARD-FISH, Iron Reducing bacteria, characterization

File Description: application/pdf

Relation: Undergraduate Research Option Theses; http://hdl.handle.net/1853/60891

Availability: http://hdl.handle.net/1853/60891


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193
Dissertation/ Thesis
Usage of metabolic inhibitors to quantify bacterial and archaeal activity in meso- and bathypelagic waters of the North Atlantic

Authors: Pontiller, Benjamin

Subject Terms: 42.94 Meeresbiologie, Erythromycin (EMY) / N1-guanyl-1,7-diaminoheptane (GC7) / MICRO-CARD-FISH / Prokaryoten / Tiefsee, Erythromycin (EMY) / N1-guanyl-1,7-diaminoheptane (GC7) / MICRO-CARD-FISH / prokaryotes / dark ocean

File Description: pdf

Relation: Pontiller, Benjamin (2015) Usage of metabolic inhibitors to quantify bacterial and archaeal activity in meso- and bathypelagic waters of the North Atlantic. Masterarbeit, Universität Wien. Fakultät für Lebenswissenschaften BetreuerIn: Herndl, J. Gerhard Gesperrt bis: 17 Mai 2016

Availability: http://othes.univie.ac.at/37444/


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196
Chloroflexus spp. and Sulfurihydrogenibium spp. in microbial mats of the Nakabusa hot spring, Japan

Authors: Kubo, Kyoko, Knittel, Katrin, Amann, Rudolf, Fukui, F, Matsuura, Katsumi

Superior Title: Supplement to: Kubo, Kyoko; Knittel, Katrin; Amann, Rudolf; Fukui, F; Matsuura, Katsumi (2011): Sulfur-metabolizing bacterial populations in microbial mats of the Nakabusa hot spring, Japan. Systematic and Applied Microbiology, 34(4), 293-302, https://doi.org/10.1016/j.syapm.2010.12.002

Subject Terms: Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH), Chloroflexu spp., targeted with CFX1238 oligonucleotides FISH-probe, Date/Time of event, DEPTH, sediment/rock, Epifluorescence microscopy after DAPI staining, Event label, HAND, Japan, Latitude of event, Longitude of event, Nakabusa_20060915, Ratio, Sampling by hand, Sulfurihydrogenibium spp., targeted with SFH646 oligonucleotides FISH-probe, Volume

Subject Geographic: LATITUDE: 36.387500 * LONGITUDE: 137.750000 * DATE/TIME START: 2006-09-15T00:00:00 * DATE/TIME END: 2006-09-15T00:00:00 * MINIMUM DEPTH, sediment/rock: 0.00015 m * MAXIMUM DEPTH, sediment/rock: 0.00240 m

File Description: text/tab-separated-values, 24 data points

Relation: Oligonucleotide probes and formamide concentration used in Kubo et al., 2011 (URI: https://store.pangaea.de/Publications/Kubo-etal_2011/Oligonucleotide-probes_Kubo-etal_2011.pdf); https://doi.pangaea.de/10.1594/PANGAEA.859266

Availability: https://doi.org/10.1016/j.syapm.2010.12.002

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197
Verrucomicrobia in situ abundance and water chemistry in a humic lake during the year 2000

Authors: Arnds, Julia, Knittel, Katrin, Buck, Ulrike, Winkel, Matthias, Amann, Rudolf

Superior Title: Supplement to: Arnds, Julia; Knittel, Katrin; Buck, Ulrike; Winkel, Matthias; Amann, Rudolf (2010): Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake. Systematic and Applied Microbiology, 33(3), 139-148, https://doi.org/10.1016/j.syapm.2009.12.005

Subject Terms: Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe, Brandenburg, Germany, Carbon, organic, dissolved, Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH), Date/Time of event, DEPTH, water, Epifluorescence microscopy after DAPI staining, Event label, GrosseFuchskuhle_NE_20000301, GrosseFuchskuhle_NE_20000629, GrosseFuchskuhle_NE_20000912, GrosseFuchskuhle_NE_20001211, GrosseFuchskuhle_SW_20000301, GrosseFuchskuhle_SW_20000629, GrosseFuchskuhle_SW_20000912, GrosseFuchskuhle_SW_20001211, Latitude of event, Location, Longitude of event, Nitrogen, total, Opitutus spp., targeted with OPT1169 oligonucleotides FISH-probe, Oxygen saturation, pH

Subject Geographic: LATITUDE: 53.105700 * LONGITUDE: 12.984900 * DATE/TIME START: 2000-03-01T00:00:00 * DATE/TIME END: 2000-12-11T00:00:00 * MINIMUM DEPTH, water: 0.5 m * MAXIMUM DEPTH, water: 4.5 m

File Description: text/tab-separated-values, 201 data points

Relation: Oligonucleotide probes and formamide concentration used in Arnds et al., 2010 (URI: https://store.pangaea.de/Publications/Arnds-etal_2010/Oligonucleotide-probes_Arnds-etal_2010.jpg); https://doi.pangaea.de/10.1594/PANGAEA.859225

Availability: https://doi.org/10.1016/j.syapm.2009.12.005

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