Search Results - "Koliński, Andrzej"

61

Academic Journal

Monte Carlo Simulations of the Folding of β -Barrel Globular Proteins

Authors: Skolnick, Jeffrey, Kolinski, Andrzej, Yaris, Robert

Superior Title: Proceedings of the National Academy of Sciences of the United States of America, 1988 Jul . 85(14), 5057-5061.

Access URL: https://www.jstor.org/stable/32358

62

Academic Journal

Dynamic Monte Carlo Study of the Folding of a Six-Stranded Greek Key Globular Protein

Authors: Skolnick, Jeffrey, Kolinski, Andrzej, Yaris, Robert

Superior Title: Proceedings of the National Academy of Sciences of the United States of America, 1989 Feb . 86(4), 1229-1233.

Access URL: https://www.jstor.org/stable/33382

63

Academic Journal

Simulations of the Folding Pathway of Triose Phosphate Isomerase-Type α/β Barrel Proteins

Authors: Godzik, Adam, Skolnick, Jeffrey, Kolinski, Andrzej

Superior Title: Proceedings of the National Academy of Sciences of the United States of America, 1992 Apr 01. 89(7), 2629-2633.

Access URL: https://www.jstor.org/stable/2358945

64

Academic Journal

Simulations of the Folding of a Globular Protein

Authors: Skolnick, Jeffrey, Kolinski, Andrzej

Superior Title: Science, 1990 Nov . 250(4984), 1121-1125.

Access URL: https://www.jstor.org/stable/2878286

65

Academic Journal

CABS-flex: server for fast simulation of protein structure fluctuations

Authors: Jamroz, Michal, Kolinski, Andrzej, Kmiecik, Sebastian

Subject Terms: Articles

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692091; http://www.ncbi.nlm.nih.gov/pubmed/23658222; http://dx.doi.org/10.1093/nar/gkt332

Availability: https://doi.org/10.1093/nar/gkt332
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692091
http://www.ncbi.nlm.nih.gov/pubmed/23658222

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66

Academic Journal

CABS-fold: server for the de novo and consensus-based prediction of protein structure

Authors: Blaszczyk, Maciej, Jamroz, Michal, Kmiecik, Sebastian, Kolinski, Andrzej

Subject Terms: Articles

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692050; http://www.ncbi.nlm.nih.gov/pubmed/23748950; http://dx.doi.org/10.1093/nar/gkt462

Availability: https://doi.org/10.1093/nar/gkt462
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692050
http://www.ncbi.nlm.nih.gov/pubmed/23748950

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67

Academic Journal

Combining Coarse-Grained Protein Models with Replica-Exchange All-Atom Molecular Dynamics

Authors: Wabik, Jacek, Kmiecik, Sebastian, Gront, Dominik, Kouza, Maksim, Koliński, Andrzej

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3676820; http://www.ncbi.nlm.nih.gov/pubmed/23665897; http://dx.doi.org/10.3390/ijms14059893

Availability: https://doi.org/10.3390/ijms14059893
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3676820
http://www.ncbi.nlm.nih.gov/pubmed/23665897

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68

Academic Journal

ClusCo: clustering and comparison of protein models

Authors: Jamroz, Michal, Kolinski, Andrzej

Subject Terms: Software

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3645956; http://www.ncbi.nlm.nih.gov/pubmed/23433004; http://dx.doi.org/10.1186/1471-2105-14-62

Availability: https://doi.org/10.1186/1471-2105-14-62
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3645956
http://www.ncbi.nlm.nih.gov/pubmed/23433004

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69

Academic Journal

Protein Folding: Flexible Lattice Models

Authors: Kolinski, Andrzej, Rotkiewicz, Piotr, Ilkowski, Bartosz, Skolnick, Jeffrey

Subject Terms: Articles

File Description: text/html

Relation: http://ptps.oxfordjournals.org/cgi/content/short/138/0/292; http://dx.doi.org/10.1143/PTPS.138.292

Availability: https://doi.org/10.1143/PTPS.138.292
http://ptps.oxfordjournals.org/cgi/content/short/138/0/292

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70

Academic Journal

A structure-based model fails to probe the mechanical unfolding pathways of the titin I27 domain

Authors: Kouza, Maksim, Hu, Chin-Kun, Li, Mai Suan, Kolinski, Andrzej

Subject Terms: Physics - Biological Physics, Quantitative Biology - Biomolecules

Relation: http://arxiv.org/abs/1308.3070; J. Chem. Phys, 139, 065103 (2013)

Availability: https://doi.org/10.1063/1.4817773
http://arxiv.org/abs/1308.3070

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71

Academic Journal

New Methods to Improve Protein Structure Prediction and Refinement

Authors: Kloczkowski, Andrzej, Gniewek, Pawel, Faraggi, Eshel, Zimmermann, Michael, Gront, Dominik, Pawlowski, Marcin, Jernigan, Robert L., Kolinski, Andrzej

Superior Title: Biophysical Journal ; volume 104, issue 2, page 229a ; ISSN 0006-3495

Subject Terms: Biophysics

Availability: https://doi.org/10.1016/j.bpj.2012.11.1292
https://api.elsevier.com/content/article/PII:S0006349512025386?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S0006349512025386?httpAccept=text/plain

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72

Academic Journal

Fast learning optimized prediction methodology (FLOPRED) for protein secondary structure prediction

Authors: Saraswathi, Saras, Fernández-Martínez, Juan Luis, Kolinski, Andrzej, Jernigan, Robert L., Kloczkowski, Andrzej

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694724; http://www.ncbi.nlm.nih.gov/pubmed/22562230; http://dx.doi.org/10.1007/s00894-012-1410-7

Availability: https://doi.org/10.1007/s00894-012-1410-7
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694724
http://www.ncbi.nlm.nih.gov/pubmed/22562230

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73

Academic Journal

BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles

Authors: Gront, Dominik, Blaszczyk, Maciej, Wojciechowski, Piotr, Kolinski, Andrzej

Subject Terms: Articles

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394251; http://www.ncbi.nlm.nih.gov/pubmed/22693216; http://dx.doi.org/10.1093/nar/gks555

Availability: https://doi.org/10.1093/nar/gks555
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394251
http://www.ncbi.nlm.nih.gov/pubmed/22693216

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74

Academic Journal

Elastic network normal modes provide a basis for protein structure refinement

Authors: Gniewek, Pawel, Kolinski, Andrzej, Jernigan, Robert L., Kloczkowski, Andrzej

Subject Terms: Biological Molecules, Biopolymers, and Biological Systems

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3365912; http://www.ncbi.nlm.nih.gov/pubmed/22612113; http://dx.doi.org/10.1063/1.4710986

Availability: https://doi.org/10.1063/1.4710986
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3365912
http://www.ncbi.nlm.nih.gov/pubmed/22612113

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75

Academic Journal

Coarse-Grained Modeling of Mucus Barrier Properties

Authors: Gniewek, Pawel, Kolinski, Andrzej

Subject Terms: Biological Systems and Multicellular Dynamics

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3260744; http://www.ncbi.nlm.nih.gov/pubmed/22339855; http://dx.doi.org/10.1016/j.bpj.2011.11.4010

Availability: https://doi.org/10.1016/j.bpj.2011.11.4010
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3260744
http://www.ncbi.nlm.nih.gov/pubmed/22339855

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76

Academic Journal

Structural features that predict real-value fluctuations of globular proteins

Authors: Jamroz, Michal, Kolinski, Andrzej, Kihara, Daisuke

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3323684; http://www.ncbi.nlm.nih.gov/pubmed/22328193; http://dx.doi.org/10.1002/prot.24040

Availability: https://doi.org/10.1002/prot.24040
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3323684
http://www.ncbi.nlm.nih.gov/pubmed/22328193

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77

Academic Journal

ANM Normal Modes Show the Directions for Protein Structure Refinement

Authors: Gniewek, Pawel, Kolinski, Andrzej, Jernigan, Robert L., Kloczkowski, Andrzej

Superior Title: Biophysical Journal ; volume 102, issue 3, page 25a ; ISSN 0006-3495

Subject Terms: Biophysics

Availability: https://doi.org/10.1016/j.bpj.2011.11.162
https://api.elsevier.com/content/article/PII:S0006349511015104?httpAccept=text/xml
https://api.elsevier.com/content/article/PII:S0006349511015104?httpAccept=text/plain

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78

Academic Journal

How noise in force fields can affect the structural refinement of protein models

Authors: Gniewek, Pawel, Kolinski, Andrzej, Jernigan, Robert L, Kloczkowski, Andrzej

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3326201; http://www.ncbi.nlm.nih.gov/pubmed/22223184; http://dx.doi.org/10.1002/prot.23240

Availability: https://doi.org/10.1002/prot.23240
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3326201
http://www.ncbi.nlm.nih.gov/pubmed/22223184

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79

Academic Journal

Multi-Body Coarse-Grained Potentials for Native Structure Recognition and Quality Assessment of Protein Models

Authors: Gniewek, Pawel, Leelananda, Sumudu P., Kolinski, Andrzej, Jernigan, Robert L., Kloczkowski, Andrzej

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3093657; http://www.ncbi.nlm.nih.gov/pubmed/21560165; http://dx.doi.org/10.1002/prot.23015

Availability: https://doi.org/10.1002/prot.23015
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3093657
http://www.ncbi.nlm.nih.gov/pubmed/21560165

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80

Academic Journal

Simulation of Chaperonin Effect on Protein Folding: A Shift from Nucleation–Condensation to Framework Mechanism

Authors: Kmiecik, Sebastian, Kolinski, Andrzej

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3132998; http://www.ncbi.nlm.nih.gov/pubmed/21618995; http://dx.doi.org/10.1021/ja203275f

Availability: https://doi.org/10.1021/ja203275f
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3132998
http://www.ncbi.nlm.nih.gov/pubmed/21618995

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