Search Results - Glazier, James A.

1

Academic Journal

Using deep LSD to build operators in GANs latent space with meaning in real space

Authors: Toledo-Marín, J. Quetzalcóatl, Glazier, James A.

Superior Title: PLoS One

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10309997/; http://dx.doi.org/10.1371/journal.pone.0287736

Availability: https://doi.org/10.1371/journal.pone.0287736
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10309997/

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2

Academic Journal

Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics

Authors: Aponte-Serrano, Josua O., Weaver, Jordan J. A., Sego, T. J., Glazier, James A., Shoemaker, Jason E.

Superior Title: PLoS Comput Biol

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8608315/; http://www.ncbi.nlm.nih.gov/pubmed/34695114; http://dx.doi.org/10.1371/journal.pcbi.1008874

Availability: https://doi.org/10.1371/journal.pcbi.1008874
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8608315/
http://www.ncbi.nlm.nih.gov/pubmed/34695114

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3

Academic Journal

Generation of multicellular spatiotemporal models of population dynamics from ordinary differential equations, with applications in viral infection

Authors: Sego, T. J., Aponte-Serrano, Josua O., Gianlupi, Juliano F., Glazier, James A.

Superior Title: BMC Biol

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8424622/; http://dx.doi.org/10.1186/s12915-021-01115-z

Availability: https://doi.org/10.1186/s12915-021-01115-z
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8424622/

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4

Academic Journal

A computational model of liver tissue damage and repair

Authors: Adhyapok, Priyom, Fu, Xiao, Sluka, James P., Clendenon, Sherry G., Sluka, Victoria D., Wang, Zemin, Dunn, Kenneth, Klaunig, James E., Glazier, James A.

Superior Title: PLoS One

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7752149/; http://www.ncbi.nlm.nih.gov/pubmed/33347443; http://dx.doi.org/10.1371/journal.pone.0243451

Availability: https://doi.org/10.1371/journal.pone.0243451
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7752149/
http://www.ncbi.nlm.nih.gov/pubmed/33347443

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5

Academic Journal

A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness

Authors: Sego, T. J., Aponte-Serrano, Josua O., Ferrari Gianlupi, Juliano, Heaps, Samuel R., Breithaupt, Kira, Brusch, Lutz, Crawshaw, Jessica, Osborne, James M., Quardokus, Ellen M., Plemper, Richard K., Glazier, James A.

Superior Title: PLoS Comput Biol

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7785254/; http://www.ncbi.nlm.nih.gov/pubmed/33347439; http://dx.doi.org/10.1371/journal.pcbi.1008451

Availability: https://doi.org/10.1371/journal.pcbi.1008451
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7785254/
http://www.ncbi.nlm.nih.gov/pubmed/33347439

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6

Academic Journal

Modeling of xenobiotic transport and metabolism in virtual hepatic lobule models

Authors: Fu, Xiao, Sluka, James P., Clendenon, Sherry G., Dunn, Kenneth W., Wang, Zemin, Klaunig, James E., Glazier, James A.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6136710/; http://www.ncbi.nlm.nih.gov/pubmed/30212461; http://dx.doi.org/10.1371/journal.pone.0198060

Availability: https://doi.org/10.1371/journal.pone.0198060
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6136710/
http://www.ncbi.nlm.nih.gov/pubmed/30212461

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7

Academic Journal

Haptoglobin Genotype and Outcome after Subarachnoid Haemorrhage: New Insights from a Meta-Analysis

Authors: Gaastra, Ben, Glazier, James, Bulters, Diederik, Galea, Ian

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634574/; http://www.ncbi.nlm.nih.gov/pubmed/29104730; http://dx.doi.org/10.1155/2017/6747940

Availability: https://doi.org/10.1155/2017/6747940
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634574/
http://www.ncbi.nlm.nih.gov/pubmed/29104730

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8

Academic Journal

A Computational Model of Peripheral Photocoagulation for the Prevention of Progressive Diabetic Capillary Occlusion

Authors: Gast, Thomas J., Fu, Xiao, Gens, John Scott, Glazier, James A.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5099465/; http://www.ncbi.nlm.nih.gov/pubmed/27847828; http://dx.doi.org/10.1155/2016/2508381

Availability: https://doi.org/10.1155/2016/2508381
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5099465/
http://www.ncbi.nlm.nih.gov/pubmed/27847828

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9

Academic Journal

A Liver-Centric Multiscale Modeling Framework for Xenobiotics

Authors: Sluka, James P., Fu, Xiao, Swat, Maciej, Belmonte, Julio M., Cosmanescu, Alin, Clendenon, Sherry G., Wambaugh, John F., Glazier, James A.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5026379/; http://www.ncbi.nlm.nih.gov/pubmed/27636091; http://dx.doi.org/10.1371/journal.pone.0162428

Availability: https://doi.org/10.1371/journal.pone.0162428
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5026379/
http://www.ncbi.nlm.nih.gov/pubmed/27636091

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10

Academic Journal

Progression of Diabetic Capillary Occlusion: A Model

Authors: Fu, Xiao, Gens, John Scott, Glazier, James A., Burns, Stephen A., Gast, Thomas J.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907516/; http://www.ncbi.nlm.nih.gov/pubmed/27300722; http://dx.doi.org/10.1371/journal.pcbi.1004932

Availability: https://doi.org/10.1371/journal.pcbi.1004932
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907516/
http://www.ncbi.nlm.nih.gov/pubmed/27300722

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11

Academic Journal

Filopodial-Tension Model of Convergent-Extension of Tissues

Authors: Belmonte, Julio M., Swat, Maciej H., Glazier, James A.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4913901/; http://www.ncbi.nlm.nih.gov/pubmed/27322528; http://dx.doi.org/10.1371/journal.pcbi.1004952

Availability: https://doi.org/10.1371/journal.pcbi.1004952
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4913901/
http://www.ncbi.nlm.nih.gov/pubmed/27322528

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12

Academic Journal

Emergent Stratification in Solid Tumors Selects for Reduced Cohesion of Tumor Cells: A Multi-Cell, Virtual-Tissue Model of Tumor Evolution Using CompuCell3D

Authors: Swat, Maciej H., Thomas, Gilberto L., Shirinifard, Abbas, Clendenon, Sherry G., Glazier, James A.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4470639/; http://www.ncbi.nlm.nih.gov/pubmed/26083246; http://dx.doi.org/10.1371/journal.pone.0127972

Availability: https://doi.org/10.1371/journal.pone.0127972
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4470639/
http://www.ncbi.nlm.nih.gov/pubmed/26083246

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13

Academic Journal

Adhesion Failures Determine the Pattern of Choroidal Neovascularization in the Eye: A Computer Simulation Study

Authors: Shirinifard, Abbas, Glazier, James Alexander, Swat, Maciej, Gens, J. Scott, Family, Fereydoon, Jiang, Yi, Grossniklaus, Hans E.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342931; http://www.ncbi.nlm.nih.gov/pubmed/22570603; http://dx.doi.org/10.1371/journal.pcbi.1002440

Availability: https://doi.org/10.1371/journal.pcbi.1002440
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342931
http://www.ncbi.nlm.nih.gov/pubmed/22570603

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14

Academic Journal

A Multi-cell, Multi-scale Model of Vertebrate Segmentation and Somite Formation

Authors: Hester, Susan D., Belmonte, Julio M., Gens, J. Scott, Clendenon, Sherry G., Glazier, James A.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3188485; http://www.ncbi.nlm.nih.gov/pubmed/21998560; http://dx.doi.org/10.1371/journal.pcbi.1002155

Availability: https://doi.org/10.1371/journal.pcbi.1002155
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3188485
http://www.ncbi.nlm.nih.gov/pubmed/21998560

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15

Academic Journal

Computer Simulation of Cellular Patterning Within the Drosophila Pupal Eye

Authors: Larson, David E., Johnson, Ruth I., Swat, Maciej, Cordero, Julia B., Glazier, James A., Cagan, Ross L.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2895643; http://www.ncbi.nlm.nih.gov/pubmed/20617161; http://dx.doi.org/10.1371/journal.pcbi.1000841

Availability: https://doi.org/10.1371/journal.pcbi.1000841
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2895643
http://www.ncbi.nlm.nih.gov/pubmed/20617161

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16

Academic Journal

Front Instabilities and Invasiveness of Simulated 3D Avascular Tumors

Authors: Poplawski, Nikodem J., Shirinifard, Abbas, Agero, Ubirajara, Gens, J. Scott, Swat, Maciej, Glazier, James A.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877086; http://www.ncbi.nlm.nih.gov/pubmed/20520818; http://dx.doi.org/10.1371/journal.pone.0010641

Availability: https://doi.org/10.1371/journal.pone.0010641
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877086
http://www.ncbi.nlm.nih.gov/pubmed/20520818

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17

Academic Journal

Modeling Gastrulation in the Chick Embryo: Formation of the Primitive Streak

Authors: Vasiev, Bakhtier, Balter, Ariel, Chaplain, Mark, Glazier, James A., Weijer, Cornelis J.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2868022; http://www.ncbi.nlm.nih.gov/pubmed/20485500; http://dx.doi.org/10.1371/journal.pone.0010571

Availability: https://doi.org/10.1371/journal.pone.0010571
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2868022
http://www.ncbi.nlm.nih.gov/pubmed/20485500

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18

Academic Journal

3D Multi-Cell Simulation of Tumor Growth and Angiogenesis

Authors: Shirinifard, Abbas, Gens, J. Scott, Zaitlen, Benjamin L., Popławski, Nikodem J., Swat, Maciej, Glazier, James A.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2760204; http://www.ncbi.nlm.nih.gov/pubmed/19834621; http://dx.doi.org/10.1371/journal.pone.0007190

Availability: https://doi.org/10.1371/journal.pone.0007190
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2760204
http://www.ncbi.nlm.nih.gov/pubmed/19834621

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19

Academic Journal

Contact-Inhibited Chemotaxis in De Novo and Sprouting Blood-Vessel Growth

Authors: Merks, Roeland M. H., Perryn, Erica D., Shirinifard, Abbas, Glazier, James A.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2528254; http://www.ncbi.nlm.nih.gov/pubmed/18802455; http://dx.doi.org/10.1371/journal.pcbi.1000163

Availability: https://doi.org/10.1371/journal.pcbi.1000163
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2528254
http://www.ncbi.nlm.nih.gov/pubmed/18802455

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20

Academic Journal

Dynamical mechanisms for skeletal pattern formation in the vertebrate limb.

Authors: Hentschel, H. G. E., Glimm, Tilmann, Glazier, James A., Newman, Stuart A.

Subject Terms: Research Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1691788; http://www.ncbi.nlm.nih.gov/pubmed/15306292; http://dx.doi.org/10.1098/rspb.2004.2772

Availability: https://doi.org/10.1098/rspb.2004.2772
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1691788
http://www.ncbi.nlm.nih.gov/pubmed/15306292

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