Search Results - "Koliński, Andrzej"

1

Academic Journal

Protein–Protein Docking with Large-Scale Backbone Flexibility Using Coarse-Grained Monte-Carlo Simulations

Authors: Kurcinski, Mateusz, Kmiecik, Sebastian, Zalewski, Mateusz, Kolinski, Andrzej

Superior Title: Int J Mol Sci

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8306105/; http://www.ncbi.nlm.nih.gov/pubmed/34298961; http://dx.doi.org/10.3390/ijms22147341

Availability: https://doi.org/10.3390/ijms22147341
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8306105/
http://www.ncbi.nlm.nih.gov/pubmed/34298961

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2

Academic Journal

Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction

Authors: Ciemny, Maciej Pawel, Debinski, Aleksander, Paczkowska, Marta, Kolinski, Andrzej, Kurcinski, Mateusz, Kmiecik, Sebastian

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5131342/; http://www.ncbi.nlm.nih.gov/pubmed/27905468; http://dx.doi.org/10.1038/srep37532

Availability: https://doi.org/10.1038/srep37532
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5131342/
http://www.ncbi.nlm.nih.gov/pubmed/27905468

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3

Academic Journal

Coarse-Grained Modeling of Peptide Docking Associated with Large Conformation Transitions of the Binding Protein: Troponin I Fragment–Troponin C System

Authors: Wabik, Jacek, Kurcinski, Mateusz, Kolinski, Andrzej, Ragno, Rino

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6272278/; http://www.ncbi.nlm.nih.gov/pubmed/26111167; http://dx.doi.org/10.3390/molecules200610763

Availability: https://doi.org/10.3390/molecules200610763
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6272278/
http://www.ncbi.nlm.nih.gov/pubmed/26111167

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4

Academic Journal

Combining Coarse-Grained Protein Models with Replica-Exchange All-Atom Molecular Dynamics

Authors: Wabik, Jacek, Kmiecik, Sebastian, Gront, Dominik, Kouza, Maksim, Koliński, Andrzej

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3676820; http://www.ncbi.nlm.nih.gov/pubmed/23665897; http://dx.doi.org/10.3390/ijms14059893

Availability: https://doi.org/10.3390/ijms14059893
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3676820
http://www.ncbi.nlm.nih.gov/pubmed/23665897

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5

Academic Journal

Fast learning optimized prediction methodology (FLOPRED) for protein secondary structure prediction

Authors: Saraswathi, Saras, Fernández-Martínez, Juan Luis, Kolinski, Andrzej, Jernigan, Robert L., Kloczkowski, Andrzej

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694724; http://www.ncbi.nlm.nih.gov/pubmed/22562230; http://dx.doi.org/10.1007/s00894-012-1410-7

Availability: https://doi.org/10.1007/s00894-012-1410-7
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694724
http://www.ncbi.nlm.nih.gov/pubmed/22562230

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6

Academic Journal

Structural features that predict real-value fluctuations of globular proteins

Authors: Jamroz, Michal, Kolinski, Andrzej, Kihara, Daisuke

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3323684; http://www.ncbi.nlm.nih.gov/pubmed/22328193; http://dx.doi.org/10.1002/prot.24040

Availability: https://doi.org/10.1002/prot.24040
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3323684
http://www.ncbi.nlm.nih.gov/pubmed/22328193

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7

Academic Journal

How noise in force fields can affect the structural refinement of protein models

Authors: Gniewek, Pawel, Kolinski, Andrzej, Jernigan, Robert L, Kloczkowski, Andrzej

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3326201; http://www.ncbi.nlm.nih.gov/pubmed/22223184; http://dx.doi.org/10.1002/prot.23240

Availability: https://doi.org/10.1002/prot.23240
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3326201
http://www.ncbi.nlm.nih.gov/pubmed/22223184

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8

Academic Journal

Multi-Body Coarse-Grained Potentials for Native Structure Recognition and Quality Assessment of Protein Models

Authors: Gniewek, Pawel, Leelananda, Sumudu P., Kolinski, Andrzej, Jernigan, Robert L., Kloczkowski, Andrzej

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3093657; http://www.ncbi.nlm.nih.gov/pubmed/21560165; http://dx.doi.org/10.1002/prot.23015

Availability: https://doi.org/10.1002/prot.23015
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3093657
http://www.ncbi.nlm.nih.gov/pubmed/21560165

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9

Academic Journal

Theoretical study of molecular mechanism of binding TRAP220 coactivator to Retinoid X Receptor alpha, activated by 9-cis retinoic acid

Authors: Kurcinski, Mateusz, Kolinski, Andrzej

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2906686; http://www.ncbi.nlm.nih.gov/pubmed/20398753; http://dx.doi.org/10.1016/j.jsbmb.2010.03.086

Availability: https://doi.org/10.1016/j.jsbmb.2010.03.086
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2906686
http://www.ncbi.nlm.nih.gov/pubmed/20398753

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10

Academic Journal

Distance Matrix-Based Approach to Protein Structure Prediction

Authors: Kloczkowski, Andrzej, Jernigan, Robert L., Wu, Zhijun, Song, Guang, Yang, Lei, Kolinski, Andrzej, Pokarowski, Piotr

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3018873; http://www.ncbi.nlm.nih.gov/pubmed/19224393; http://dx.doi.org/10.1007/s10969-009-9062-2

Availability: https://doi.org/10.1007/s10969-009-9062-2
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3018873
http://www.ncbi.nlm.nih.gov/pubmed/19224393

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11

Academic Journal

Inferring Ideal Amino Acid Interaction Forms From Statistical Protein Contact Potentials

Authors: Pokarowski, Piotr, Kloczkowski, Andrzej, Jernigan, Robert L., Kothari, Neha S., Pokarowska, Maria, Kolinski, Andrzej

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4417612/; http://www.ncbi.nlm.nih.gov/pubmed/15688450; http://dx.doi.org/10.1002/prot.20380

Availability: https://doi.org/10.1002/prot.20380
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4417612/
http://www.ncbi.nlm.nih.gov/pubmed/15688450

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12

Academic Journal

Protein Structure Prediction by Tempering Spatial Constraints

Authors: Gront, Dominik, Kolinski, Andrzej, Hansmann, Ulrich H.E.

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1473033; http://www.ncbi.nlm.nih.gov/pubmed/16267688; http://dx.doi.org/10.1007/s10822-005-9016-0

Availability: https://doi.org/10.1007/s10822-005-9016-0
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1473033
http://www.ncbi.nlm.nih.gov/pubmed/16267688

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13

Academic Journal

Exploring protein energy landscapes with hierarchical clustering.

Authors: Gront, Dominik, Hansmann, Ulrich H.E., Kolinski, Andrzej

Subject Terms: Article

Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1366497; http://www.ncbi.nlm.nih.gov/pubmed/16479277; http://dx.doi.org/10.1002/qua.20741

Availability: https://doi.org/10.1002/qua.20741
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1366497
http://www.ncbi.nlm.nih.gov/pubmed/16479277

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14

Academic Journal

A new approach to prediction of short-range conformational propensities in proteins

Authors: Gront, Dominik, Kolinski, Andrzej

Subject Terms: Article

File Description: text/html

Relation: http://bioinformatics.oxfordjournals.org/cgi/content/short/bti080v1; http://dx.doi.org/10.1093/bioinformatics/bti080

Availability: https://doi.org/10.1093/bioinformatics/bti080
http://bioinformatics.oxfordjournals.org/cgi/content/short/bti080v1

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15

Academic Journal

EEC - COMECON - difficulties in reaching an agreement: Vortrag im Europa-Institut der Universität des Saarlandes, Saarbrücken, 8. Februar 1989

Authors: Koliński, Andrzej

Subject Terms: article, ddc:17 16, Handel und Zoll, ddc:343

Time: 2

File Description: print; 26 S

Relation: https://doi.org/10.17176/20160905-165501; https://nbn-resolving.org/urn:nbn:de:0301-20160905-165609-1; https://intr2dok.vifa-recht.de/receive/mir_mods_00000546; https://intr2dok.vifa-recht.de/servlets/MCRFileNodeServlet/mir_derivate_00000406/153.pdf; http://uri.gbv.de/document/gvk:ppn:272736473

Availability: https://doi.org/10.17176/20160905-165501
https://nbn-resolving.org/urn:nbn:de:0301-20160905-165609-1
https://intr2dok.vifa-recht.de/receive/mir_mods_00000546
https://intr2dok.vifa-recht.de/servlets/MCRFileNodeServlet/mir_derivate_00000406/153.pdf
http://uri.gbv.de/document/gvk:ppn:272736473

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16

Academic Journal

EEC - COMECON - difficulties in reaching an agreement: Vortrag im Europa-Institut der Universität des Saarlandes, Saarbrücken, 8. Februar 1989 ; EEC – COMECON – difficulties in reaching an agreement: Presentation at the Europa Institute of the University of Saarland, Saarbrücken, 8 February 1989

Authors: Koliński, Andrzej

Subject Terms: article, ddc:17 16, Handel und Zoll, ddc:343, musiq, lang

Time: 2

Relation: https://intr2dok.vifa-recht.de/servlets/MCRFileNodeServlet/mir_derivate_00000406/153.pdf; https://doi.org/10.17176/20160905-165501

Availability: https://doi.org/10.17176/20160905-165501
https://intr2dok.vifa-recht.de/servlets/MCRFileNodeServlet/mir_derivate_00000406/153.pdf

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