Authors: Pokarowski, Piotr, Kolinski, Andrzej, Skolnick, Jeffrey
Subject Terms: Biophysical Theory and Modeling
Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1302725; http://www.ncbi.nlm.nih.gov/pubmed/12609858
Availability:
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1302725
http://www.ncbi.nlm.nih.gov/pubmed/12609858
Contributors: College of Sciences, Georgia Institute of Technology. Center for the Study of Systems Biology, School of Biological Sciences, Georgia Institute of Technology. School of Biology, Center for the Study of Systems Biology, Uniwersytet Warszawski. Pracownie Teorii Biopolimerów, Uniwersytet Warszawski. Wydział Chemii, State University of New York at Buffalo. Center of Excellence in Bioinformatics
Subject Terms: Lattice protein models, Monte Carlo method, Globular proteins, Native state, Protein unfolding
File Description: application/pdf
Relation: Kolinski, A, Klein P, Romiszowski P, Skolnick J. 2003. Unfolding of globular proteins: monte carlo dynamics of a realistic reduced model. Biophysical journal. 85(5):3271-8.; http://hdl.handle.net/1853/41961
Availability: http://hdl.handle.net/1853/41961
Authors: Pokarowski, Piotr, Kolinski, Andrzej, Skolnick, Jeffrey
Contributors: College of Sciences, Georgia Institute of Technology. Center for the Study of Systems Biology, School of Biological Sciences, Georgia Institute of Technology. School of Biology, Center for the Study of Systems Biology, Uniwersytet Warszawski. Instytut Matematyki Stosowanej i Mechaniki, Uniwersytet Warszawski. Pracownie Teorii Biopolimerów, Uniwersytet Warszawski. Wydział Chemii, Donald Danforth Plant Science Center. Bioinformatics and Computational Genomics
Subject Terms: Globular proteins, Hydrophobic polymers, Lattice protein models, Replica exchange Monte Carlo method
File Description: application/pdf
Relation: Pokarowski, P, Kolinski A, Skolnick J. 2003. A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native state. Biophysical journal. 84(3):1518-26.; http://hdl.handle.net/1853/41959
Availability: http://hdl.handle.net/1853/41959
Authors: Zhang, Yang, Kolinski, Andrzej, Skolnick, Jeffrey
Contributors: College of Sciences, Georgia Institute of Technology. Center for the Study of Systems Biology, School of Biological Sciences, Georgia Institute of Technology. School of Biology, Center for the Study of Systems Biology, State University of New York at Buffalo. Center of Excellence in Bioinformatics, Uniwersytet Warszawski. Wydział Chemii
Subject Terms: Ab initio protein structure prediction, Tertiary structure predictions, Protein decoys, Parallel hyperbolic sampling algorithm, Genome sequencing
File Description: application/pdf
Relation: Zhang, Y, Kolinski A, Skolnick J. 2003. TOUCHSTONE II: a new approach to ab initio protein structure prediction. Biophysical journal. 85(2):1145-64.; http://hdl.handle.net/1853/41962
Availability: http://hdl.handle.net/1853/41962
Authors: Viñals, Jorge, Kolinski, Andrzej, Skolnick, Jeffrey
Contributors: College of Sciences, Georgia Institute of Technology. Center for the Study of Systems Biology, School of Biological Sciences, Georgia Institute of Technology. School of Biology, Center for the Study of Systems Biology, Donald Danforth Plant Science Center. Laboratory of Computational Genomics, Uniwersytet Warszawski. Wydział Chemii
Subject Terms: Lattice protein models, Monte Carlo method, Leucine zippers, Dimers, Dimerization
File Description: application/pdf
Relation: Viñals, J, Kolinski A, Skolnick J. 2002. Numerical study of the entropy loss of dimerization and the folding thermodynamics of the GCN4 leucine zipper. Biophysical Journal. 83(5):2801-11.; http://hdl.handle.net/1853/41956
Availability: http://hdl.handle.net/1853/41956
Authors: Kolinski, Andrzej, Ilkowski, Bartosz, Skolnick, Jeffrey
Contributors: College of Sciences, Uniwersytet Warszawski. Wydział Chemii, School of Biological Sciences, Scripps Research Institute. Dept. of Molecular Biology, Center for the Study of Systems Biology
Subject Terms: Globular proteins, Peptides, Simulation, Monte Carlo method, Protein folding
File Description: application/pdf
Relation: Kolinski, A, Ilkowski B, Skolnick J. 1999. Dynamics and thermodynamics of beta-hairpin assembly: insights from various simulation techniques. Biophysical journal. 77(6):2942-52.; http://hdl.handle.net/1853/41943
Availability: http://hdl.handle.net/1853/41943
Authors: Mohanty, Debasisa, Kolinski, Andrzej, Skolnick, Jeffrey
Contributors: College of Sciences, Uniwersytet Warszawski. Wydział Chemii, School of Biological Sciences, Scripps Research Institute. Dept. of Molecular Biology, Center for the Study of Systems Biology
Subject Terms: Entropy sampling Monte Carlo simulation, Leucine zippers, Two-state model, Coiled coils, Folding transition
File Description: application/pdf
Relation: Mohanty, D, Kolinski A, Skolnick J. 1999. De novo simulations of the folding thermodynamics of the GCN4 leucine zipper. Biophysical journal. 77(1):54-69.; http://hdl.handle.net/1853/41944
Availability: http://hdl.handle.net/1853/41944
Authors: Sikorski, Andrzej, Kolinski, Andrzej, Skolnick, Jeffrey
Contributors: College of Sciences, Uniwersytet Warszawski. Wydział Chemii, School of Biological Sciences, Scripps Research Institute. Dept. of Molecular Biology, Center for the Study of Systems Biology
Subject Terms: Globular proteins, Monte Carlo method, Protein folding, Simulation
File Description: application/pdf
Relation: Sikorski, A, Kolinski A, Skolnick J. 1998. Computer simulations of de novo designed helical proteins. Biophysical journal. 75(1):92-105.; http://hdl.handle.net/1853/41942
Availability: http://hdl.handle.net/1853/41942