Authors: Bandara, Chaturanga D., Schmidt, Matthias, Davoudpour, Yalda, Stryhanyuk, Hryhoriy, Richnow, Hans H., Musat, Niculina
Superior Title: Bandara , C D , Schmidt , M , Davoudpour , Y , Stryhanyuk , H , Richnow , H H & Musat , N 2023 , ' Corrigendum : Microbial identification, high-resolution microscopy and spectrometry of the rhizosphere in its native spatial context ' , Frontiers in Plant Science , vol. 13 , 1125001 . https://doi.org/10.3389/fpls.2022.1125001
Subject Terms: CARD-FISH, correlative chemical microscopy, helium ion microscopy, London resin white embedding, rhizosphere, secondary ion mass spectrometry, soil bacteria, water-jet cutting
Authors: Massé, Anaïs, Detang, Juliette, Duval, Charlotte, Duperron, Sébastien, Woo, Anthony, C, Domart-Coulon, Isabelle
Contributors: Molécules de Communication et Adaptation des Micro-organismes (MCAM), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Acquisition et Analyse de Données pour l'Histoire naturelle (2AD)
Superior Title: ISSN: 2076-2607 ; Microorganisms ; https://mnhn.hal.science/mnhn-04102589 ; Microorganisms, 2023, 11 (5), pp.1318. ⟨10.3390/microorganisms11051318⟩.
Subject Terms: Ulvophyceae, bacterial communities, microbiota, endosymbionts, salinity, 16S rDNA, metabarcoding, CARD-FISH, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis
Relation: mnhn-04102589; https://mnhn.hal.science/mnhn-04102589; https://mnhn.hal.science/mnhn-04102589/document; https://mnhn.hal.science/mnhn-04102589/file/Mass%C3%A9%20et%20al%202023.pdf
Authors: Anaïs Massé, Juliette Detang, Charlotte Duval, Sébastien Duperron, Anthony C. Woo, Isabelle Domart-Coulon
Superior Title: Microorganisms; Volume 11; Issue 5; Pages: 1318
Subject Terms: Ulvophyceae, bacterial communities, microbiota, endosymbionts, salinity, 16S rDNA, metabarcoding, CARD-FISH
Subject Geographic: agris
File Description: application/pdf
Relation: Environmental Microbiology; https://dx.doi.org/10.3390/microorganisms11051318
Availability: https://doi.org/10.3390/microorganisms11051318
Authors: Anna Katharina Wittenborn, Thorsten Bauersachs, Christiane Hassenrück, Katja Käding, Janine Wäge-Recchioni, Klaus Jürgens, Helge Wolfgang Arz, Jérôme Kaiser
Superior Title: Frontiers in Microbiology, Vol 14 (2023)
Subject Terms: Thaumarchaeota, Nitrososphaeria, intact and core GDGTs, TEX86, 16S rRNA, CARD-FISH, Microbiology, QR1-502
Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2023.1216130/full; https://doaj.org/toc/1664-302X; https://doaj.org/article/a0059389e8364297889baf527868f6f6
Authors: Chaturanga D. Bandara, Matthias Schmidt, Yalda Davoudpour, Hryhoriy Stryhanyuk, Hans H. Richnow, Niculina Musat
Superior Title: Frontiers in Plant Science, Vol 13 (2023)
Subject Terms: CARD-FISH, correlative chemical microscopy, helium ion microscopy, London resin white embedding, rhizosphere, secondary ion mass spectrometry, Plant culture, SB1-1110
Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.1125001/full; https://doaj.org/toc/1664-462X; https://doaj.org/article/fc42c1761df448e49de4d1d28490665a
Authors: Massé, Anaïs, Detang, Juliette, Duval, Charlotte, Duperron, Sébastien, Woo, Anthony, Domart-Coulon, Isabelle
Contributors: Molécules de Communication et Adaptation des Micro-organismes (MCAM), Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS), Acquisition et Analyse de Données pour l'Histoire naturelle (2AD)
Superior Title: ISSN: 2076-2607 ; Microorganisms ; https://mnhn.hal.science/mnhn-04102589 ; Microorganisms, 2023, 11 (5), pp.1318. ⟨10.3390/microorganisms11051318⟩.
Subject Terms: Ulvophyceae, bacterial communities, microbiota, endosymbionts, salinity, 16S rDNA, metabarcoding, CARD-FISH, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis
Relation: mnhn-04102589; https://mnhn.hal.science/mnhn-04102589; https://mnhn.hal.science/mnhn-04102589/document; https://mnhn.hal.science/mnhn-04102589/file/Mass%C3%A9%20et%20al%202023.pdf
Authors: Gianna Dirren-Pitsch, Dominique Bühler, Michaela M. Salcher, Barbara Bassin, Alizée Le Moigne, Martina Schuler, Jakob Pernthaler, Thomas Posch
Superior Title: Frontiers in Microbiology, Vol 13 (2022)
Subject Terms: planktonic ciliates, CARD-FISH, fluorescence in situ hybridization, lake water samples, quantitative protargol staining, ciliate quantification, Microbiology, QR1-502
Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2022.1070232/full; https://doaj.org/toc/1664-302X; https://doaj.org/article/041cdc8b82844b35b3e4e5694b34ea20
Contributors: Fundación General CSIC, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España)
Subject Terms: Plastic leaching, Microplastics, Microbial community, BONCAT, CARD-FISH, DOM
Relation: #PLACEHOLDER_PARENT_METADATA_VALUE#; info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2019-109889RJ-I00/ES/CHARACTERIZATION OF DISSOLVED ORGANIC MATTER LEACHED FROM PLASTICS INTO SEAWATER AND ITS IMPACT ON MARINE MICROBES/; info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/RTI2018-101025-B-I00/ES/FORMACION Y CAMBIO EN LA ESTRUCTURA DE LAS COMUNIDADES MICROBIANAS MARINAS A ESCALAS TEMPORALES Y ESPACIALES CORTAS: EL PAPEL DE LAS ESPECIES DE CRECIMIENTO EXPLOSIVO/; Publisher's version; https://doi.org/10.1016/j.scitotenv.2022.155264; Sí; Science of the Total Environment 834: 155264 (2022); CEX2019-000928-S; http://hdl.handle.net/10261/278898
Subject Terms: Arctic, bacterial community composition, CARD-FISH, marine sediment, Svalbard, TOC
File Description: application/zip
Authors: Bandara, Chiththaka Chaturanga Devapriya Bandara, Schmidt, Matthias, Davoudpour, Yalda, Stryhanyuk, Hryhoriy, Richnow, Hans Hermann, Musat, Niculina
Superior Title: ISSN: 1664-462X.
Subject Terms: CARD-FISH, Chemical microscopy, HIM, Nano-SIMS, Resin embedding, rhizosphere, soil bacteria, spatial distribution, Water-jet cutting
File Description: application/pdf
Relation: https://doi.org/10.48758/ufz.11158; https://www.ufz.de/index.php?en=20939&ufzPublicationIdentifier=24272; https://dx.doi.org/10.3389/fpls.2021.668929
Authors: Bandara, Chaturanga D., Schmidt, Matthias, Davoudpour, Yalda, Stryhanyuk, Hryhoriy, Richnow, Hans H., Musat, Niculina
Superior Title: Bandara , C D , Schmidt , M , Davoudpour , Y , Stryhanyuk , H , Richnow , H H & Musat , N 2021 , ' Microbial Identification, High-Resolution Microscopy and Spectrometry of the Rhizosphere in Its Native Spatial Context ' , Frontiers in Plant Science , vol. 12 , 668929 . https://doi.org/10.3389/fpls.2021.668929
Subject Terms: CARD-FISH, correlative chemical microscopy, Helium Ion Microscopy, London Resin White embedding, Rhizosphere, Secondary Ion Mass Spectrometry, Soil bacteria, Water-jet cutting
Relation: https://research-information.bris.ac.uk/en/publications/790dd6fb-bc10-47c1-ad41-c6c7aca16787
Authors: Brunet, Maéva, Le Duff, Nolwen, Fuchs, Bernhard, M, Amann, Rudolf, Barbeyron, Tristan, Thomas, François
Contributors: Laboratoire de Biologie Intégrative des Modèles Marins (LBI2M), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff = Roscoff Marine Station (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Max Planck Institute for Marine Microbiology, Max-Planck-Gesellschaft, ANR-18-CE02-0001,ALGAVOR,Stratégies écologiques et métaboliques de bactéries spécialistes de la dégradation des macroalgues(2018)
Superior Title: ISSN: 0723-2020 ; Systematic and Applied Microbiology ; https://hal.sorbonne-universite.fr/hal-03417302 ; Systematic and Applied Microbiology, 2021, 44 (6), pp.126269. ⟨10.1016/j.syapm.2021.126269⟩.
Subject Terms: Zobellia, qPCR, CARD-FISH, macroalgae, marine flavobacteria, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Relation: hal-03417302; https://hal.sorbonne-universite.fr/hal-03417302; https://hal.sorbonne-universite.fr/hal-03417302/document; https://hal.sorbonne-universite.fr/hal-03417302/file/qPCR-FISH_SAM_revised.pdf
Authors: Chaturanga D. Bandara, Matthias Schmidt, Yalda Davoudpour, Hryhoriy Stryhanyuk, Hans H. Richnow, Niculina Musat
Superior Title: Frontiers in Plant Science, Vol 12 (2021)
Subject Terms: CARD-FISH, correlative chemical microscopy, Helium Ion Microscopy, London Resin White embedding, Rhizosphere, Secondary Ion Mass Spectrometry, Plant culture, SB1-1110
Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.668929/full; https://doaj.org/toc/1664-462X; https://doaj.org/article/adbf02a816e84a39be69dbc37075cd5f
Superior Title: Frontiers in Microbiology, Vol 12 (2021)
Subject Terms: Arctic Ocean, Fram Strait, bacterioplankton, CARD-FISH, water column, Microbiology, QR1-502
Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.658803/full; https://doaj.org/toc/1664-302X; https://doaj.org/article/6c7b175dc39d4663b67b495300dd1775
Superior Title: Frontiers in Microbiology, Vol 12 (2021)
Subject Terms: aquatic microbial food webs, CARD-FISH, grazing by protists, protists, unicellular eukaryotes, bacterivorous, Microbiology, QR1-502
Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.640066/full; https://doaj.org/toc/1664-302X; https://doaj.org/article/3ef7d22b3aee40fe8059d414b47b742b
Authors: Pin, Lorenzo, Eiler, Alexander, Fazi, Stefano, Friberg, Nikolai
Superior Title: Pin , L , Eiler , A , Fazi , S & Friberg , N 2021 , ' Two different approaches of microbial community structure characterization in riverine epilithic biofilms under multiple stressors conditions : Developing molecular indicators ' , Molecular Ecology Resources , vol. 21 , no. 4 , pp. 1200-1215 . https://doi.org/10.1111/1755-0998.13341
Subject Terms: biofilm, bioindicator, CARD-FISH, prokaryotes, river, sequencing
File Description: application/pdf
Availability:
https://doi.org/10.1111/1755-0998.13341
https://curis.ku.dk/portal/da/publications/two-different-approaches-of-microbial-community-structure-characterization-in-riverine-epilithic-biofilms-under-multiple-stressors-conditions(44193952-4954-48dd-b673-11eb295f1a48).html
https://curis.ku.dk/ws/files/306678861/Molecular_Ecology_Resources_2021_Pin_Two_different_approaches_of_microbial_community_structure_characterization_in.pdf
Authors: Montes, T., Guerrero-Feijóo, E. (Elisa), Moreira-Coello, V. (Víctor), Bode, A. (Antonio), Ruiz-Villarreal, M. (Manuel), Mouriño-Carballido, B. (Beatriz), Varela, M.M. (Marta María)
Subject Terms: Bacteria, CARD-FISH, 454 pyrosequencing, Microplankton, Summer upwelling relaxation, Upwelling pulse, NW Spain
Relation: https://doi.org/10.1016/j.ecss.2020.106791; http://hdl.handle.net/10508/14727; http://hdl.handle.net/10261/316740; 25792
Authors: Teira, E. (Eva), Lekunberri, I., Gasol, J.M. (Josep María), Nieto-Cid, M. (Mar), Álvarez-Salgado, X.A. (Xosé Antón), Figueiras, F.G.
Subject Terms: Cycloclastius bacteria, Hydrocarbon degradation, Oil spills, Mesocosmos, PAHS effects, Coastal upwelling system, Rías Baixas, Marine microbial communities dynamics, CARD-FISH use, fish, geochemistry, oil, chemistry
Subject Geographic: Vigo (Spain), January, March
Relation: Impact of the oil spill from the Prestige on the planktonic microbial food web; http://hdl.handle.net/10508/14498; http://hdl.handle.net/10261/316729; Environmental Microbiology, 9. 2007: 2551-2562; 26651
Authors: Montes, T. (Tania), Guerrero-Feijóo, E. (Elisa), Moreira-Coello, V. (Víctor), Bode, A. (Antonio), Ruiz-Villarreal, M. (Manuel), Mouriño-Carballido, B. (Beatriz), Varela, M.M. (Marta María)
Subject Terms: Bacteria, CARD-FISH, 454.pyrosequencing, Microplankton, Summer upwelling relaxation, Upwelling pulse, NW Spain, coastal upwelling, stratification, elisa, upwelling, access
Subject Geographic: Galicia (Spain), July 2012
Relation: https://www.sciencedirect.com/science/article/pii/S0272771419304032; http://hdl.handle.net/10508/12541; http://hdl.handle.net/10261/316270; Estuarine Coastal and Shelf Science, 245. 2020: 106791-106804; 23433
Authors: Brunet, Maéva, Le Duff, Nolwen, Fuchs, Bernhard, M, Amann, Rudolf, Barbeyron, Tristan, Thomas, François
Contributors: Laboratoire de Biologie Intégrative des Modèles Marins (LBI2M), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Max Planck Institute for Marine Microbiology, Max-Planck-Gesellschaft, ANR-18-CE02-0001,ALGAVOR,Stratégies écologiques et métaboliques de bactéries spécialistes de la dégradation des macroalgues(2018)
Superior Title: ISSN: 0723-2020 ; Systematic and Applied Microbiology ; https://hal.sorbonne-universite.fr/hal-03417302 ; Systematic and Applied Microbiology, 2021, 44 (6), pp.126269. ⟨10.1016/j.syapm.2021.126269⟩.
Subject Terms: Zobellia, qPCR, CARD-FISH, macroalgae, marine flavobacteria, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDE.BE]Environmental Sciences/Biodiversity and Ecology
Relation: hal-03417302; https://hal.sorbonne-universite.fr/hal-03417302; https://hal.sorbonne-universite.fr/hal-03417302/document; https://hal.sorbonne-universite.fr/hal-03417302/file/qPCR-FISH_SAM_revised.pdf