Authors: Song Feng (1639162), Emily Heath (166048), Brett Jefferson (10896256), Cliff Joslyn (29379), Henry Kvinge (10896259), Hugh D. Mitchell (437281), Brenda Praggastis (10896262), Amie J. Eisfeld (7225130), Amy C. Sims (7408214), Larissa B. Thackray (7832159), Shufang Fan (322931), Kevin B. Walters (10896265), Peter J. Halfmann (7115153), Danielle Westhoff-Smith (10896268), Qing Tan (754560), Vineet D. Menachery (10048362), Timothy P. Sheahan (7037390), Adam S. Cockrell (10896271), Jacob F. Kocher (10896274), Kelly G. Stratton (4388506), Natalie C. Heller (5693423), Lisa M. Bramer (1473334), Michael S. Diamond (7325543), Ralph S. Baric (7408220), Katrina M. Waters (175537), Yoshihiro Kawaoka (18302), Jason E. McDermott (127004), Emilie Purvine (10896277)

Subject Terms: Medicine, Genetics, Molecular Biology, Immunology, Cancer, Mental Health, Plant Biology, Computational Biology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Systems biology, Hypergraph, Viral infection, Biological networks, SARS, MERS, Influenza, West Nile Virus, Host response, Viral pathogenesis

Relation: https://figshare.com/articles/journal_contribution/Additional_file_3_of_Hypergraph_models_of_biological_networks_to_identify_genes_critical_to_pathogenic_viral_response/14702596

Availability: https://doi.org/10.6084/m9.figshare.14702596.v1

Authors: Song Feng (1639162), Emily Heath (166048), Brett Jefferson (10896256), Cliff Joslyn (29379), Henry Kvinge (10896259), Hugh D. Mitchell (437281), Brenda Praggastis (10896262), Amie J. Eisfeld (7225130), Amy C. Sims (7408214), Larissa B. Thackray (7832159), Shufang Fan (322931), Kevin B. Walters (10896265), Peter J. Halfmann (7115153), Danielle Westhoff-Smith (10896268), Qing Tan (754560), Vineet D. Menachery (10048362), Timothy P. Sheahan (7037390), Adam S. Cockrell (10896271), Jacob F. Kocher (10896274), Kelly G. Stratton (4388506), Natalie C. Heller (5693423), Lisa M. Bramer (1473334), Michael S. Diamond (7325543), Ralph S. Baric (7408220), Katrina M. Waters (175537), Yoshihiro Kawaoka (18302), Jason E. McDermott (127004), Emilie Purvine (10896277)

Subject Terms: Medicine, Genetics, Molecular Biology, Immunology, Cancer, Mental Health, Plant Biology, Computational Biology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Systems biology, Hypergraph, Viral infection, Biological networks, SARS, MERS, Influenza, West Nile Virus, Host response, Viral pathogenesis

Relation: https://figshare.com/articles/journal_contribution/Additional_file_2_of_Hypergraph_models_of_biological_networks_to_identify_genes_critical_to_pathogenic_viral_response/14702593

Availability: https://doi.org/10.6084/m9.figshare.14702593.v1

Authors: Song Feng (1639162), Emily Heath (166048), Brett Jefferson (10896256), Cliff Joslyn (29379), Henry Kvinge (10896259), Hugh D. Mitchell (437281), Brenda Praggastis (10896262), Amie J. Eisfeld (7225130), Amy C. Sims (7408214), Larissa B. Thackray (7832159), Shufang Fan (322931), Kevin B. Walters (10896265), Peter J. Halfmann (7115153), Danielle Westhoff-Smith (10896268), Qing Tan (754560), Vineet D. Menachery (10048362), Timothy P. Sheahan (7037390), Adam S. Cockrell (10896271), Jacob F. Kocher (10896274), Kelly G. Stratton (4388506), Natalie C. Heller (5693423), Lisa M. Bramer (1473334), Michael S. Diamond (7325543), Ralph S. Baric (7408220), Katrina M. Waters (175537), Yoshihiro Kawaoka (18302), Jason E. McDermott (127004), Emilie Purvine (10896277)

Subject Terms: Medicine, Genetics, Molecular Biology, Immunology, Cancer, Mental Health, Plant Biology, Computational Biology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Systems biology, Hypergraph, Viral infection, Biological networks, SARS, MERS, Influenza, West Nile Virus, Host response, Viral pathogenesis

Relation: https://figshare.com/articles/journal_contribution/Additional_file_4_of_Hypergraph_models_of_biological_networks_to_identify_genes_critical_to_pathogenic_viral_response/14702599

Availability: https://doi.org/10.6084/m9.figshare.14702599.v1

Authors: Song Feng (1639162), Emily Heath (166048), Brett Jefferson (10896256), Cliff Joslyn (29379), Henry Kvinge (10896259), Hugh D. Mitchell (437281), Brenda Praggastis (10896262), Amie J. Eisfeld (7225130), Amy C. Sims (7408214), Larissa B. Thackray (7832159), Shufang Fan (322931), Kevin B. Walters (10896265), Peter J. Halfmann (7115153), Danielle Westhoff-Smith (10896268), Qing Tan (754560), Vineet D. Menachery (10048362), Timothy P. Sheahan (7037390), Adam S. Cockrell (10896271), Jacob F. Kocher (10896274), Kelly G. Stratton (4388506), Natalie C. Heller (5693423), Lisa M. Bramer (1473334), Michael S. Diamond (7325543), Ralph S. Baric (7408220), Katrina M. Waters (175537), Yoshihiro Kawaoka (18302), Jason E. McDermott (127004), Emilie Purvine (10896277)

Subject Terms: Medicine, Genetics, Molecular Biology, Immunology, Cancer, Mental Health, Plant Biology, Computational Biology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Systems biology, Hypergraph, Viral infection, Biological networks, SARS, MERS, Influenza, West Nile Virus, Host response, Viral pathogenesis

Relation: https://figshare.com/articles/journal_contribution/Additional_file_5_of_Hypergraph_models_of_biological_networks_to_identify_genes_critical_to_pathogenic_viral_response/14702602

Availability: https://doi.org/10.6084/m9.figshare.14702602.v1

Authors: Song Feng (1639162), Emily Heath (166048), Brett Jefferson (10896256), Cliff Joslyn (29379), Henry Kvinge (10896259), Hugh D. Mitchell (437281), Brenda Praggastis (10896262), Amie J. Eisfeld (7225130), Amy C. Sims (7408214), Larissa B. Thackray (7832159), Shufang Fan (322931), Kevin B. Walters (10896265), Peter J. Halfmann (7115153), Danielle Westhoff-Smith (10896268), Qing Tan (754560), Vineet D. Menachery (10048362), Timothy P. Sheahan (7037390), Adam S. Cockrell (10896271), Jacob F. Kocher (10896274), Kelly G. Stratton (4388506), Natalie C. Heller (5693423), Lisa M. Bramer (1473334), Michael S. Diamond (7325543), Ralph S. Baric (7408220), Katrina M. Waters (175537), Yoshihiro Kawaoka (18302), Jason E. McDermott (127004), Emilie Purvine (10896277)

Subject Terms: Medicine, Genetics, Molecular Biology, Immunology, Cancer, Mental Health, Plant Biology, Computational Biology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Systems biology, Hypergraph, Viral infection, Biological networks, SARS, MERS, Influenza, West Nile Virus, Host response, Viral pathogenesis

Relation: https://figshare.com/articles/journal_contribution/Additional_file_7_of_Hypergraph_models_of_biological_networks_to_identify_genes_critical_to_pathogenic_viral_response/14702608

Availability: https://doi.org/10.6084/m9.figshare.14702608.v1

Authors: Song Feng (1639162), Emily Heath (166048), Brett Jefferson (10896256), Cliff Joslyn (29379), Henry Kvinge (10896259), Hugh D. Mitchell (437281), Brenda Praggastis (10896262), Amie J. Eisfeld (7225130), Amy C. Sims (7408214), Larissa B. Thackray (7832159), Shufang Fan (322931), Kevin B. Walters (10896265), Peter J. Halfmann (7115153), Danielle Westhoff-Smith (10896268), Qing Tan (754560), Vineet D. Menachery (10048362), Timothy P. Sheahan (7037390), Adam S. Cockrell (10896271), Jacob F. Kocher (10896274), Kelly G. Stratton (4388506), Natalie C. Heller (5693423), Lisa M. Bramer (1473334), Michael S. Diamond (7325543), Ralph S. Baric (7408220), Katrina M. Waters (175537), Yoshihiro Kawaoka (18302), Jason E. McDermott (127004), Emilie Purvine (10896277)

Subject Terms: Medicine, Genetics, Molecular Biology, Immunology, Cancer, Mental Health, Plant Biology, Computational Biology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Systems biology, Hypergraph, Viral infection, Biological networks, SARS, MERS, Influenza, West Nile Virus, Host response, Viral pathogenesis

Relation: https://figshare.com/articles/journal_contribution/Additional_file_6_of_Hypergraph_models_of_biological_networks_to_identify_genes_critical_to_pathogenic_viral_response/14702605

Availability: https://doi.org/10.6084/m9.figshare.14702605.v1

Authors: Song Feng (1639162), Emily Heath (166048), Brett Jefferson (10896256), Cliff Joslyn (29379), Henry Kvinge (10896259), Hugh D. Mitchell (437281), Brenda Praggastis (10896262), Amie J. Eisfeld (7225130), Amy C. Sims (7408214), Larissa B. Thackray (7832159), Shufang Fan (322931), Kevin B. Walters (10896265), Peter J. Halfmann (7115153), Danielle Westhoff-Smith (10896268), Qing Tan (754560), Vineet D. Menachery (10048362), Timothy P. Sheahan (7037390), Adam S. Cockrell (10896271), Jacob F. Kocher (10896274), Kelly G. Stratton (4388506), Natalie C. Heller (5693423), Lisa M. Bramer (1473334), Michael S. Diamond (7325543), Ralph S. Baric (7408220), Katrina M. Waters (175537), Yoshihiro Kawaoka (18302), Jason E. McDermott (127004), Emilie Purvine (10896277)

Subject Terms: Medicine, Genetics, Molecular Biology, Immunology, Cancer, Mental Health, Plant Biology, Computational Biology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Systems biology, Hypergraph, Viral infection, Biological networks, SARS, MERS, Influenza, West Nile Virus, Host response, Viral pathogenesis

Relation: https://figshare.com/articles/journal_contribution/Additional_file_8_of_Hypergraph_models_of_biological_networks_to_identify_genes_critical_to_pathogenic_viral_response/14702611

Availability: https://doi.org/10.6084/m9.figshare.14702611.v1

Authors: Suiyuan Wu (11203177), Long Zhang (8148420), Yao Wang (9120477), Zhu Han (10787247)

Subject Terms: Communication, Networking and Broadcast Technologies, Industrial IoT, Federated Learning, Spectrum Allocation, Device Association, Hypergraph Matching

Relation: https://figshare.com/articles/preprint/Spectrum_Allocation_and_Device_Association_in_Federated_Learning-Enabled_Industrial_IoT_via_Hypergraph_Matching/15074076

Availability: https://doi.org/10.36227/techrxiv.15074076.v1

Authors: Alejandro Alvarez-Ayllon (11844197), Manuel Palomo-duarte (588906), Juan Manuel Dodero (9921259)

Subject Terms: Computing and Processing, Schema Inference, Quasi-cliques, Hypergraphs, Inclusion Dependencies, Equally-Distributed Dependencies

Relation: https://figshare.com/articles/preprint/Noise_Resistant_Multidimensional_Data_Fusion_via_Quasi-Cliques_on_Hypergraphs/17212079

Availability: https://doi.org/10.36227/techrxiv.17212079.v1

Authors: Yaoming Zhen (11662787), Junhui Wang (217439)

Subject Terms: Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Latent space model, Network embedding, Nonuniform hypergraph, Sparse network, Tensor decomposition

Relation: https://figshare.com/articles/dataset/Community_Detection_in_General_Hypergraph_via_Graph_Embedding/16955777

Availability: https://doi.org/10.6084/m9.figshare.16955777.v2

Authors: Yubai Yuan (11712124), Annie Qu (805932)

Subject Terms: Pharmacology, Biotechnology, Science Policy, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, Data augmentation, Hypergraph, Network dependency, Shared parameters, Symmetric tensor completion

Relation: https://figshare.com/articles/dataset/High-order_Joint_Embedding_for_Multi-Level_Link_Prediction/17021845

Availability: https://doi.org/10.6084/m9.figshare.17021845.v2

Authors: Zhiqiang Chen (218692), Leelavathi Rajamanickam (11812835), Jianfang Cao (1881379), Aidi Zhao (2050579), Xiaohui Hu (511882)

Subject Terms: Biochemistry, Sociology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, useful feature information, overfitting problem caused, localization strategy combined, joint equal contribution, experimental results reveal, conducts feature reweighting, perform label localization, label localization strategy, label localization algorithm, final label set, adaptive hypergraph learning, semantic extension model, bernoulli relevance model, predicted label values, inceptionv3 network pretrained, insufficient labeled images, div >< p, automatic image annotation, optimal k value, ahl ), respectively, optimal model, transfer learning, sem ), predicted labels

Relation: https://figshare.com/articles/figure/Framework_of_the_multilabel_classification_algorithm_/17146502

Availability: https://doi.org/10.1371/journal.pone.0260758.g001

Authors: Zhiqiang Chen (218692), Leelavathi Rajamanickam (11812835), Jianfang Cao (1881379), Aidi Zhao (2050579), Xiaohui Hu (511882)

Subject Terms: Biochemistry, Sociology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, useful feature information, overfitting problem caused, localization strategy combined, joint equal contribution, experimental results reveal, conducts feature reweighting, perform label localization, label localization strategy, label localization algorithm, final label set, adaptive hypergraph learning, semantic extension model, bernoulli relevance model, predicted label values, inceptionv3 network pretrained, insufficient labeled images, div >< p, automatic image annotation, optimal k value, ahl ), respectively, optimal model, transfer learning, sem ), predicted labels

Relation: https://figshare.com/articles/figure/SE_module_/17146505

Availability: https://doi.org/10.1371/journal.pone.0260758.g002

Authors: Zhiqiang Chen (218692), Leelavathi Rajamanickam (11812835), Jianfang Cao (1881379), Aidi Zhao (2050579), Xiaohui Hu (511882)

Subject Terms: Biochemistry, Sociology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, useful feature information, overfitting problem caused, localization strategy combined, joint equal contribution, experimental results reveal, conducts feature reweighting, perform label localization, label localization strategy, label localization algorithm, final label set, adaptive hypergraph learning, semantic extension model, bernoulli relevance model, predicted label values, inceptionv3 network pretrained, insufficient labeled images, div >< p, automatic image annotation, optimal k value, ahl ), respectively, optimal model, transfer learning, sem ), predicted labels

Relation: https://figshare.com/articles/figure/Algorithm_flow_chart_/17146508

Availability: https://doi.org/10.1371/journal.pone.0260758.g003

Authors: Zhiqiang Chen (218692), Leelavathi Rajamanickam (11812835), Jianfang Cao (1881379), Aidi Zhao (2050579), Xiaohui Hu (511882)

Subject Terms: Biochemistry, Sociology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, useful feature information, overfitting problem caused, localization strategy combined, joint equal contribution, experimental results reveal, conducts feature reweighting, perform label localization, label localization strategy, label localization algorithm, final label set, adaptive hypergraph learning, semantic extension model, bernoulli relevance model, predicted label values, inceptionv3 network pretrained, insufficient labeled images, div >< p, automatic image annotation, optimal k value, ahl ), respectively, optimal model, transfer learning, sem ), predicted labels

Relation: https://figshare.com/articles/figure/Corel5k_dataset_label_statistics_/17146511

Availability: https://doi.org/10.1371/journal.pone.0260758.g004

Authors: Zhiqiang Chen (218692), Leelavathi Rajamanickam (11812835), Jianfang Cao (1881379), Aidi Zhao (2050579), Xiaohui Hu (511882)

Subject Terms: Biochemistry, Sociology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, useful feature information, overfitting problem caused, localization strategy combined, joint equal contribution, experimental results reveal, conducts feature reweighting, perform label localization, label localization strategy, label localization algorithm, final label set, adaptive hypergraph learning, semantic extension model, bernoulli relevance model, predicted label values, inceptionv3 network pretrained, insufficient labeled images, div >< p, automatic image annotation, optimal k value, ahl ), respectively, optimal model, transfer learning, sem ), predicted labels

Relation: https://figshare.com/articles/figure/Corel5k_test_set_label_frequencies_/17146514

Availability: https://doi.org/10.1371/journal.pone.0260758.g005

Authors: Zhiqiang Chen (218692), Leelavathi Rajamanickam (11812835), Jianfang Cao (1881379), Aidi Zhao (2050579), Xiaohui Hu (511882)

Subject Terms: Biochemistry, Sociology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, useful feature information, overfitting problem caused, localization strategy combined, joint equal contribution, experimental results reveal, conducts feature reweighting, perform label localization, label localization strategy, label localization algorithm, final label set, adaptive hypergraph learning, semantic extension model, bernoulli relevance model, predicted label values, inceptionv3 network pretrained, insufficient labeled images, div >< p, automatic image annotation, optimal k value, ahl ), respectively, optimal model, transfer learning, sem ), predicted labels

Relation: https://figshare.com/articles/figure/Comparison_of_the_annotation_performance_with_and_without_the_SE_module_/17146517

Availability: https://doi.org/10.1371/journal.pone.0260758.g006

Authors: Zhiqiang Chen (218692), Leelavathi Rajamanickam (11812835), Jianfang Cao (1881379), Aidi Zhao (2050579), Xiaohui Hu (511882)

Subject Terms: Biochemistry, Sociology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, useful feature information, overfitting problem caused, localization strategy combined, joint equal contribution, experimental results reveal, conducts feature reweighting, perform label localization, label localization strategy, label localization algorithm, final label set, adaptive hypergraph learning, semantic extension model, bernoulli relevance model, predicted label values, inceptionv3 network pretrained, insufficient labeled images, div >< p, automatic image annotation, optimal k value, ahl ), respectively, optimal model, transfer learning, sem ), predicted labels

Relation: https://figshare.com/articles/figure/Experimental_comparisons_of_single_category_indexes_under_different_algorithms_/17146520

Availability: https://doi.org/10.1371/journal.pone.0260758.g007

Authors: Zhiqiang Chen (218692), Leelavathi Rajamanickam (11812835), Jianfang Cao (1881379), Aidi Zhao (2050579), Xiaohui Hu (511882)

Subject Terms: Biochemistry, Sociology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, useful feature information, overfitting problem caused, localization strategy combined, joint equal contribution, experimental results reveal, conducts feature reweighting, perform label localization, label localization strategy, label localization algorithm, final label set, adaptive hypergraph learning, semantic extension model, bernoulli relevance model, predicted label values, inceptionv3 network pretrained, insufficient labeled images, div >< p, automatic image annotation, optimal k value, ahl ), respectively, optimal model, transfer learning, sem ), predicted labels

Relation: https://figshare.com/articles/dataset/Experimental_results_for_different_K_values_/17146523

Availability: https://doi.org/10.1371/journal.pone.0260758.t001

Authors: Zhiqiang Chen (218692), Leelavathi Rajamanickam (11812835), Jianfang Cao (1881379), Aidi Zhao (2050579), Xiaohui Hu (511882)

Subject Terms: Biochemistry, Sociology, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Information Systems not elsewhere classified, useful feature information, overfitting problem caused, localization strategy combined, joint equal contribution, experimental results reveal, conducts feature reweighting, perform label localization, label localization strategy, label localization algorithm, final label set, adaptive hypergraph learning, semantic extension model, bernoulli relevance model, predicted label values, inceptionv3 network pretrained, insufficient labeled images, div >< p, automatic image annotation, optimal k value, ahl ), respectively, optimal model, transfer learning, sem ), predicted labels

Relation: https://figshare.com/articles/dataset/Comparison_of_annotation_precision_for_single_category_labels_using_different_algorithms_/17146526

Availability: https://doi.org/10.1371/journal.pone.0260758.t002