Authors: Madden, Pádhraig, Al-Raei, Abdul M., Enright, Anne M., Chinalia, Fabio A., de Beer, Dirk, O'Flaherty, Vincent, Collins, Gavin
Contributors: Irish Research Council, European Research Council
Subject Terms: biogas, low-temperature anaerobic digestion, sulfate, sulfide, methane, methanogenesis, wastewater, WASTE-WATER TREATMENT, VOLATILE FATTY-ACID, 16S RIBOSOMAL-RNA, TARGETED OLIGONUCLEOTIDE PROBES, MICROBIAL COMMUNITY STRUCTURE, POLYMERASE-CHAIN-REACTION, IN-SITU HYBRIDIZATION, REDUCING BACTERIA, METHANOGENIC ACTIVITY, BIOLOGICAL TREATMENT
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Relation: Frontiers In Microbiology; Madden, Pádhraig, Al-Raei, Abdul M., Enright, Anne M., Chinalia, Fabio A., de Beer, Dirk, O'Flaherty, Vincent, & Collins, Gavin. (2014). Effect of sulfate on low-temperature anaerobic digestion. Frontiers in Microbiology, 5(376). doi:10.3389/fmicb.2014.00376; http://hdl.handle.net/10379/15424
Contributors: Seventh Framework Programme, Science Foundation Ireland
Subject Terms: biodistribution, cell therapy, genomic DNA, human Alu sequence, mesenchymal stromal cell, polymerase chain reaction, translational stem cell research, REAL-TIME PCR, STEM-CELLS, IN-VIVO, QUANTIFICATION, XENOTRANSPLANTATION, SEQUENCES, SAFETY
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Relation: Cytotherapy; Creane, Michael, Howard, Linda, O'Brien, Timothy, & Coleman, Cynthia M. (2017). Biodistribution and retention of locally administered human mesenchymal stromal cells: Quantitative polymerase chain reaction–based detection of human DNA in murine organs. Cytotherapy, 19(3), 384-394. doi: https://doi.org/10.1016/j.jcyt.2016.12.003; http://hdl.handle.net/10379/15327
Authors: Gerrity, Seán, Kennelly, Colm, Clifford, Eoghan, Collins, Gavin
Contributors: Science Foundation Ireland, European Research Council
Subject Terms: H2S oxidation, gas treatment, Horizontal-Flow Biofilm Reactor, Acidithiobacillus, Thiobacillus, POLYMERASE-CHAIN-REACTION, BIOTRICKLING FILTER, BIOLOGICAL OXIDATION, LOW-TEMPERATURES, ACTIVATED CARBON, PACKING MATERIAL, HFBR TECHNOLOGY, RIBOSOMAL-RNA, H2S EMISSION, WASTE-WATER
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Relation: Environmental Technology; Gerrity, S., Kennelly, C., Clifford, E., & Collins, G. (2016). Hydrogen sulfide oxidation in novel Horizontal-Flow Biofilm Reactors dominated by an Acidithiobacillus and a Thiobacillus species. Environmental Technology, 37(17), 2252-2264. doi:10.1080/09593330.2016.1147609; http://hdl.handle.net/10379/15055
Authors: Meena, Mukesh, Zehra, Andleeb, Dubey, Manish K., Aamir, Mohd, Gupta, Vijai K., Upadhyay, Ram S.
Subject Terms: alternaria alternate, pathogen, phytotoxic metabolites, toxins, polymerase chain reaction (pcr), plant-disease resistance, oxidative stress markers, superoxide-dismutase, hydrogen-peroxide, structural proteins, monomethyl ether, abiotic stress, acid, tolerance, products
Relation: Frontiers in Plant Science; Meena, Mukesh; Zehra, Andleeb; Dubey, Manish K. Aamir, Mohd; Gupta, Vijai K.; Upadhyay, Ram S. (2016). Comparative evaluation of biochemical changes in tomato (lycopersicon esculentum mill.) infected by alternaria alternata and its toxic metabolites (tea, aoh, and ame). Frontiers in Plant Science 7; http://hdl.handle.net/10379/12866
Authors: Lallawmsanga, Passari, Ajit Kumar, Mishra, Vineet Kumar, Leo, Vincent Vineeth, Singh, Bhim Pratap, Valliammai Meyyappan, Geetha, Gupta, Vijai Kumar, Uthandi, Sivakumar, Upadhyay, Ramesh Chandra
Subject Terms: simple sequence repeat, polymerase-chain-reaction, edible mushrooms, auricularia-auricula, genetic diversity, lentinula-edodes, bioactive compounds, cultivated strains, antioxidant, china
Relation: PLOS ONE; Lallawmsanga; Passari, Ajit Kumar; Mishra, Vineet Kumar; Leo, Vincent Vineeth; Singh, Bhim Pratap; Valliammai Meyyappan, Geetha; Gupta, Vijai Kumar; Uthandi, Sivakumar; Upadhyay, Ramesh Chandra (2016). Antimicrobial potential, identification and phylogenetic affiliation of wild mushrooms from two sub-tropical semi-evergreen indian forest ecosystems. PLOS ONE 11 (11); http://hdl.handle.net/10379/12365
Authors: Devonshire, Alison S., O’Sullivan, Denise M., Honeyborne, Isobella, Jones, Gerwyn, Karczmarczyk, Maria, Pavšič, Jernej, Gutteridge, Alice, Milavec, Mojca, Mendoza, Pablo, Schimmel, Heinz, Van Heuverswyn, Fran, Gorton, Rebecca, Cirillo, Daniela Maria, Borroni, Emanuele, Harris, Kathryn, Barnard, Marinus, Heydenrych, Anthenette, Ndusilo, Norah, Wallis, Carole L., Pillay, Keshree, Barry, Thomas, Reddington, Kate, Richter, Elvira, Mozioğlu, Erkan, Akyürek, Sema, Yalçınkaya, Burhanettin, Akgoz, Muslum, Žel, Jana, Foy, Carole A., McHugh, Timothy D., Huggett, Jim F.
Subject Terms: digital pcr, diagnostics, mycobacterium tuberculosis, xpert mtb/rif assay, polymerase-chain-reaction, guidelines minimum information, assessing treatment response, bacterial load assay, pulmonary tuberculosis, human cytomegalovirus, amplification assays, mycobacterial load, bacillary load
Relation: BMC Infectious Diseases; Devonshire, Alison S. O’Sullivan, Denise M.; Honeyborne, Isobella; Jones, Gerwyn; Karczmarczyk, Maria; Pavšič, Jernej; Gutteridge, Alice; Milavec, Mojca; Mendoza, Pablo; Schimmel, Heinz; Van Heuverswyn, Fran; Gorton, Rebecca; Cirillo, Daniela Maria; Borroni, Emanuele; Harris, Kathryn; Barnard, Marinus; Heydenrych, Anthenette; Ndusilo, Norah; Wallis, Carole L.; Pillay, Keshree; Barry, Thomas; Reddington, Kate; Richter, Elvira; Mozioğlu, Erkan; Akyürek, Sema; Yalçınkaya, Burhanettin; Akgoz, Muslum; Žel, Jana; Foy, Carole A.; McHugh, Timothy D.; Huggett, Jim F. (2016). The use of digital pcr to improve the application of quantitative molecular diagnostic methods for tuberculosis. BMC Infectious Diseases 16; http://hdl.handle.net/10379/11177
Authors: Aiyaz, Mohammed, Thimmappa Divakara, Shetty, Mudili, Venkataramana, George Moore, Geromy, Kumar Gupta, Vijai, i Yli-Mattila, Tapan, Chandra Nayaka, Siddaiah, Ramachandrappa Niranjana, Siddapura
Subject Terms: maize, fusarium, tef-1 alpha gene, inter simple sequence repeats, fumonisin gene cluster, cd-elisa, polymerase-chain-reaction, polyketide synthase gene, neural-tube defects, fumonisin production, gibberella-moniliformis, mycotoxin contamination, aspergillus-flavus, sequence alignment, southern india, risk-factor
Relation: Current Genomics; Aiyaz, Mohammed; Thimmappa Divakara, Shetty; Mudili, Venkataramana; George Moore, Geromy; Kumar Gupta, Vijai; i Yli-Mattila, Tapan; Chandra Nayaka, Siddaiah; Ramachandrappa Niranjana, Siddapura (2016). Molecular diversity of seed-borne fusarium species associated with maize in india. Current Genomics 17 (2), 132-144; http://hdl.handle.net/10379/10175
Subject Terms: polymerase-chain-reaction, distribution-system biofilms, ribosomal-rna genes, long-term survival, distribution networks, total bacteria, potable water, o157-h7, samples, soil
Relation: Applied and Environmental Microbiology; Abberton, Cathy L. Bereschenko, Ludmila; van der Wielen, Paul W. J. J.; Smith, Cindy J. (2016). Survival, biofilm formation, and growth potential of environmental and enteric escherichia coli strains in drinking water microcosms. Applied and Environmental Microbiology 82 (17), 5320-5331; 0099-2240,1098-5336; http://hdl.handle.net/10379/10062
Authors: Gunnigle, Eoin, Nielsen, Jeppe L., Fuszard, Matthew, Botting, Catherine H., Sheahan, Jerome, Vincent, O’Flaherty, Abram, Florence
Subject Terms: anaerobic digestion, metaproteomics, microbial phylogenetic diversity, methanogenesis, psychrophilic, mar-fish, waste-water treatment, 16s ribosomal-rna, gradient gel-electrophoresis, polymerase-chain-reaction, in-situ hybridization, low-temperature, phylogenetic analyses, population-dynamics, granular sludge, bed reactor
Relation: FEMS Microbiology Ecology; Gunnigle, Eoin; Nielsen, Jeppe L. Fuszard, Matthew; Botting, Catherine H.; Sheahan, Jerome; Vincent, O’Flaherty; Abram, Florence (2015). Functional responses and adaptation of mesophilic microbial communities to psychrophilic anaerobic digestion. FEMS Microbiology Ecology 91 (12); http://hdl.handle.net/10379/11757
Authors: Maher, Majella, Glennon, Maura, Smith, Terry, Dawson, Michael T.
Contributors: ~
Subject Terms: Polymerase chain-reaction, Clinical samples, DNA amplification, Identification, Specimens, Sediments
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Relation: JOURNAL OF CLINICAL MICROBIOLOGY; Maher, M., Glennon, M., Martinazzo, E., Turchetti, E., Marcolini, S., Smith, T.J. and Dawson, M.T. (1996) 'Evaluation of a novel PCR based diagnostic assay for the detection of Mycobacterium tuberculosis in sputum specimens'. JOURNAL OF CLINICAL MICROBIOLOGY, 34 (9):2307-2308.; http://hdl.handle.net/10379/4041
Availability: http://hdl.handle.net/10379/4041
Authors: Harris, K. A., Yam, T., Jalili, S., Williams, O. M., Alshafi, K., Gouliouris, T., Munthali, P., NiRiain, U., Hartley, J. C.
Subject Terms: culture-negative endocarditis, polymerase-chain-reaction, etiologic diagnosis, bartonella, valves, guidelines
Relation: European Journal of Clinical Microbiology & Infectious Diseases; Harris, K. A. Yam, T.; Jalili, S.; Williams, O. M.; Alshafi, K.; Gouliouris, T.; Munthali, P.; NiRiain, U.; Hartley, J. C. (2014). Service evaluation to establish the sensitivity, specificity and additional value of broad-range 16s rdna pcr for the diagnosis of infective endocarditis from resected endocardial material in patients from eight uk and ireland hospitals. European Journal of Clinical Microbiology & Infectious Diseases 33 (11), 2061-2066; 0934-9723,1435-4373; http://hdl.handle.net/10379/11824
Authors: Verna, Eric
Subject Terms: gene expression, 2(-delta delta ct) method, real-time polymerase chain reaction, pcr
Relation: World Journal of Gastroenterology; Verna, Eric (2012). More attention should be paid on the interpretation of gene expression data. World Journal of Gastroenterology 18 (24), 3181-3182; http://hdl.handle.net/10379/14310
Authors: Seager, Ishla, Leeson, Michael D., Crampin, Amelia C., Mulawa, Dominic, French, Neil, Glynn, Judith R., Travers, Simon A.A., McCormack, Grace P.
Subject Terms: immunodeficiency-virus type-1, polymerase chain-reaction, blood spot specimens, drug-resistance, rural malawi, DNA
Relation: AIDS Research and Human Retroviruses; Seager, Ishla; Leeson, Michael D. Crampin, Amelia C.; Mulawa, Dominic; French, Neil; Glynn, Judith R.; Travers, Simon A.A.; McCormack, Grace P. (2012). Hiv type 1 mutational patterns in hiv type 1 subtype c-infected long-term survivors in karonga district malawi: further analysis and correction. AIDS Research and Human Retroviruses 28 (3), 308-313; 0889-2229,1931-8405; http://hdl.handle.net/10379/13843
Subject Terms: waste-water treatment, polymerase-chain-reaction, neighbor-joining method, real-time pcr, methanogenic communities, degrees-c, lake sediment, paddy soil, hydrogen, wastewaters
Relation: Microbial Biotechnology; Bialek, Katarzyna; Kumar, Amit; Mahony, Thérèse; Lens, Piet N. L. O' Flaherty, Vincent (2012). Microbial community structure and dynamics in anaerobic fluidized-bed and granular sludge-bed reactors: influence of operational temperature and reactor configuration. Microbial Biotechnology 5 (6), 738-752; http://hdl.handle.net/10379/10434
Subject Terms: polymerase chain-reaction, messenger-rna expression, rt-pcr, glyceraldehyde-3-phosphate dehydrogenase, beta-actin, housekeeping genes, breast-cancer, ribosomal-rna, transcription, quantification
Relation: BMC Molecular Biology; Kheirelseid, Elrasheid AH; Chang, Kah; Newell, John; Kerin, Michael J; Miller, Nicola (2010). Identification of endogenous control genes for normalisation of real-time quantitative pcr data in colorectal cancer. BMC Molecular Biology 11; http://hdl.handle.net/10379/12255
Subject Terms: polymerase chain-reaction, time quantitative pcr, rt-pcr, housekeeping genes, ribosomal-rna, normalization, identification, colon, differentiation, tissues
Relation: BMC Cancer; Chang, Kah Hoong; Mestdagh, Pieter; Vandesompele, Jo; Kerin, Michael J; Miller, Nicola (2010). Microrna expression profiling to identify and validate reference genes for relative quantification in colorectal cancer. BMC Cancer 10; http://hdl.handle.net/10379/10745
Authors: Touzet, Nicolas, Keady, Evelyn, Raine, Robin, Maher, Majella
Subject Terms: alexandrium, fish, hab, psp, rt-pcr, targeted oligonucleotide probes, polymerase-chain-reaction, irish coastal waters, in-field samples, rapid detection, tamarense, dinoflagellate, enumeration, maine, assay
Relation: FEMS Microbiology Ecology; Touzet, Nicolas; Keady, Evelyn; Raine, Robin; Maher, Majella (2009). Evaluation of taxa-specific real-time pcr, whole-cell fish and morphotaxonomy analyses for the detection and quantification of the toxic microalgae alexandrium minutum (dinophyceae), global clade ribotype. FEMS Microbiology Ecology 67 (2), 329-341; 0168-6496,1574-6941; http://hdl.handle.net/10379/14188
Subject Terms: listeria monocylogenes, real-time pcr, internal amplification control (iac), food, ssra gene/tmrna, polymerase-chain-reaction, quantitative detection, salmonella, assay, quantification, innocua, spp, meat, identification, amplification
Relation: Food Microbiology; O’ Grady, Justin; Sedano-Balbás, Sara; Maher, Majella; Smith, Terry; Barry, Thomas (2008). Rapid real-time pcr detection of listeria monocytogenes in enriched food samples based on the ssra gene, a novel diagnostic target. Food Microbiology 25 (1), 75-84; http://hdl.handle.net/10379/13159
Authors: Lee, Changsoo, Kim, Jaai, Shin, Seung Gu, Hwang, Seokhwan
Subject Terms: anaerobic digestion, denaturing gradient gel electrophoresis (dgge), microbial community structure, nonmetric multidimensional scaling (nmds), real-time pcr, polymerase-chain-reaction, population-dynamics, sp-nov, methanogenic community, microbial-populations, whey permeate, ribosomal-rna, dilution rate, sludge
Relation: FEMS Microbiology Ecology; Lee, Changsoo; Kim, Jaai; Shin, Seung Gu; Hwang, Seokhwan (2008). Monitoring bacterial and archaeal community shifts in a mesophilic anaerobic batch reactor treating a high-strength organic wastewater. FEMS Microbiology Ecology 65 (3), 544-554; 0168-6496,1574-6941; http://hdl.handle.net/10379/12411
Subject Terms: polymerase chain-reaction, small nucleolar rna, glyceraldehyde-3-phosphate dehydrogenase gene, human-lung cancers, real-time pcr, messenger-rna, rt-pcr, ribosomal-rna, tumor invasion, fragile sites
Relation: BMC Molecular Biology; Davoren, Pamela A; McNeill, Roisin E; Lowery, Aoife J; Kerin, Michael J; Miller, Nicola (2008). Identification of suitable endogenous control genes for microrna gene expression analysis in human breast cancer. BMC Molecular Biology 9; http://hdl.handle.net/10379/11086